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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0758200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dof2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.62 (0.0442) R2 : 0.786
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.82 (0.108) R2dC : 0.589 R2C : 0.58
β3 : -3 (0.143) R2dE : 0.207 R2E : 0.198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.19 (0.0932) R2dN8 : 0.00266 R2N8 : -0.00646
σ : 0.827
deviance : 315.09
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_____
C
peak time of C : 21.5
E
wheather : temperature
threshold : 8.505
memory length : 123
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.95
open length of G : 19.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
312.55 0.831 6.61 -0.00324 3.81 -3.02 -0.137 1.32 0.219 21.5 8.786 124 4.95 19.3
314.62 0.826 6.62 -0.105 3.84 -2.98 -0.238 -- 0.183 21.5 8.5 123 4.96 19.4
312.49 0.823 6.61 0.0105 3.82 -3.02 -- 1.41 0.217 21.5 8.289 124 4.93 19.4
314.82 0.826 6.62 -0.108 3.83 -2.97 -- -- 0.186 21.5 8.304 123 4.95 19.4
863.61 1.38 6.48 0.2 -- -3.81 -- 1.26 0.308 -- 11.41 8 4.45 18.5
426.38 0.968 6.67 -0.477 4.08 -- -0.247 -- -0.114 23.3 -- -- -- --
426.64 0.967 6.67 -0.467 4.08 -- -- -- -0.113 23.3 -- -- -- --
366.09 0.891 6.47 0.158 -- -4.87 -- -- 0.299 -- 6.527 333 2.85 10.3
315.09 0.827 6.62 -- 3.82 -3 -- -- 0.19 21.5 8.505 123 4.95 19.4
1467.94 1.79 6.57 -0.365 -- -- -- -- -0.0743 -- -- -- -- --
432.38 0.973 6.66 -- 4.07 -- -- -- -0.0607 23.3 -- -- -- --
357.62 0.881 6.53 -- -- -4.45 -- -- 0.162 -- 1.341 302 3.13 10.4
1471.45 1.79 6.56 -- -- -- -- -- -0.0338 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 317.32 temperature 10 90 > th dose dependent rect. 5 19
5 326.96 temperature 10 270 > th dose dependent rect. 3 21
28 335.22 humidity 70 43200 > th dose dependent rect. 14 1
32 336.50 temperature 15 720 > th dose dependent rect. 4 3
34 337.11 temperature 20 14400 < th dose independent rect. 6 1
35 337.13 humidity 80 43200 > th dose dependent rect. 13 13
38 337.33 temperature 20 14400 < th dose dependent rect. 5 2
41 337.48 temperature 20 14400 > th dose independent rect. 6 1
44 337.62 humidity 80 43200 > th dose dependent rect. 11 17
46 337.77 temperature 20 14400 < th dose dependent rect. 24 2
49 337.83 humidity 80 43200 > th dose dependent rect. 22 1
56 338.07 humidity 80 43200 > th dose dependent sin 16 NA
62 338.15 temperature 20 14400 < th dose dependent rect. 24 7
101 339.03 temperature 20 43200 > th dose dependent rect. 5 1
119 339.30 humidity 80 43200 > th dose independent rect. 11 13
121 339.31 humidity 80 43200 > th dose independent rect. 10 15
164 339.92 humidity 80 43200 > th dose dependent rect. 20 4
172 340.07 temperature 20 43200 > th dose dependent rect. 21 1
188 340.24 humidity 80 43200 < th dose independent rect. 3 15
191 340.25 temperature 20 14400 < th dose dependent sin 7 NA
192 340.25 temperature 20 14400 < th dose dependent rect. 18 13
206 340.32 humidity 80 43200 > th dose independent rect. 13 3
217 340.37 humidity 80 43200 < th dose independent rect. 14 2
273 340.74 radiation 20 43200 > th dose dependent rect. 16 15
297 340.94 temperature 30 43200 > th dose independent rect. 14 1
306 340.98 humidity 80 43200 > th dose independent rect. 3 16
313 341.03 humidity 70 43200 > th dose independent rect. 7 1
334 341.13 temperature 20 720 > th dose dependent rect. 5 1
372 341.34 temperature 20 43200 > th dose dependent rect. 19 13
400 341.46 temperature 25 43200 > th dose independent rect. 20 1
437 341.59 radiation 1 30 > th dose independent sin 4 NA
439 341.59 temperature 20 43200 < th dose independent rect. 4 4
477 341.69 temperature 30 43200 < th dose independent rect. 14 1
487 341.73 radiation 1 43200 < th dose dependent rect. 5 9
516 341.82 temperature 20 43200 > th dose dependent sin 11 NA
549 341.89 temperature 25 43200 < th dose independent rect. 19 2
568 341.94 humidity 80 43200 > th dose dependent rect. 20 23
623 342.06 humidity 80 43200 > th dose dependent no NA NA
625 342.06 radiation 1 43200 < th dose dependent rect. 1 13
636 342.09 humidity 80 43200 < th dose independent rect. 11 13
649 342.11 radiation 1 43200 < th dose dependent rect. 21 17
704 342.21 temperature 25 43200 < th dose independent rect. 16 6
727 342.24 humidity 80 43200 > th dose independent sin 19 NA
747 342.28 radiation 1 43200 < th dose dependent rect. 5 6
751 342.28 humidity 80 43200 > th dose dependent rect. 16 23
823 342.38 temperature 20 43200 > th dose independent rect. 22 1
846 342.41 humidity 80 43200 > th dose dependent rect. 3 23
875 342.47 temperature 25 43200 > th dose independent rect. 16 6
900 342.51 temperature 20 43200 > th dose independent rect. 22 10
939 342.56 radiation 1 43200 < th dose dependent sin 5 NA
944 342.57 temperature 20 43200 < th dose independent rect. 22 1
955 342.58 radiation 1 43200 < th dose dependent rect. 17 1
970 342.59 temperature 20 43200 > th dose dependent rect. 1 23
972 342.60 temperature 20 43200 > th dose dependent no NA NA
986 342.61 temperature 20 43200 < th dose independent rect. 22 10