Os07g0236700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dof2 (Fragment).
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Os07g0236700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dof2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.21 | 0.434 | 8.62 | 0.228 | 0.313 | -0.909 | 0.842 | 1.7 | 0.216 | 17.6 | 23.5 | 792 | -- | -- |
| 88.11 | 0.437 | 8.58 | 0.439 | 0.295 | -1.32 | 0.796 | -- | 0.276 | 16.9 | 22.1 | 767 | -- | -- |
| 86.67 | 0.434 | 8.61 | 0.233 | 0.339 | -0.932 | -- | 1.63 | 0.232 | 18 | 23.04 | 850 | -- | -- |
| 89.52 | 0.441 | 8.58 | 0.455 | 0.321 | -1.31 | -- | -- | 0.301 | 17.9 | 21.88 | 784 | -- | -- |
| 92.09 | 0.447 | 8.6 | 0.256 | -- | -1 | -- | 1.45 | 0.228 | -- | 22.99 | 733 | -- | -- |
| 107.28 | 0.486 | 8.54 | 0.786 | 0.367 | -- | 0.469 | -- | 0.46 | 18.5 | -- | -- | -- | -- |
| 107.58 | 0.486 | 8.54 | 0.777 | 0.373 | -- | -- | -- | 0.461 | 19.1 | -- | -- | -- | -- |
| 94.19 | 0.452 | 8.57 | 0.44 | -- | -1.35 | -- | -- | 0.281 | -- | 22.11 | 641 | -- | -- |
| 93.03 | 0.449 | 8.58 | -- | 0.446 | -1.4 | -- | -- | 0.26 | 18.8 | 21.14 | 5515 | -- | -- |
| 114.93 | 0.501 | 8.53 | 0.77 | -- | -- | -- | -- | 0.454 | -- | -- | -- | -- | -- |
| 123.5 | 0.52 | 8.56 | -- | 0.365 | -- | -- | -- | 0.374 | 19.3 | -- | -- | -- | -- |
| 98.49 | 0.462 | 8.59 | -- | -- | -1.61 | -- | -- | 0.208 | -- | 21.9 | 659 | -- | -- |
| 130.57 | 0.533 | 8.55 | -- | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 15 | 84.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 10 |
| 31 | 84.35 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |
| 34 | 84.38 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 37 | 84.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 71 | 84.59 | humidity | 90 | 14400 | > th | dose dependent | sin | 6 | NA |
| 92 | 84.69 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 18 |
| 93 | 84.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 120 | 84.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 160 | 84.93 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 161 | 84.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 265 | 85.32 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 299 | 85.44 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 347 | 85.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 399 | 85.80 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 438 | 86.01 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 456 | 86.13 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 577 | 86.56 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 653 | 86.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 687 | 86.89 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 18 |
| 704 | 86.95 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 719 | 86.99 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 23 |
| 767 | 87.14 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 775 | 87.17 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 21 |
| 788 | 87.20 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 22 |
| 811 | 87.28 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 817 | 87.30 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 834 | 87.33 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 18 |
| 862 | 87.40 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 917 | 87.53 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 934 | 87.57 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 976 | 87.68 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 988 | 87.71 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |