Os07g0508900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, Dof-type family protein.
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Os07g0508900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, Dof-type family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.5 | 0.494 | 6.87 | 1.91 | 0.586 | -2.38 | 0.79 | 1.88 | 0.504 | 6.02 | 9.532 | 285 | -- | -- |
| 111.72 | 0.492 | 6.9 | 1.63 | 0.663 | -2.44 | 0.306 | -- | 0.426 | 7.16 | 8.724 | 173 | -- | -- |
| 111.21 | 0.491 | 6.88 | 1.82 | 0.611 | -2.45 | -- | 1.07 | 0.472 | 6.87 | 10.38 | 218 | -- | -- |
| 111.96 | 0.493 | 6.9 | 1.64 | 0.658 | -2.46 | -- | -- | 0.431 | 7.2 | 8.612 | 173 | -- | -- |
| 124.33 | 0.519 | 6.87 | 1.97 | -- | -2.95 | -- | 1.32 | 0.57 | -- | 12.35 | 312 | -- | -- |
| 171.1 | 0.613 | 6.96 | 1.13 | 1.23 | -- | 0.906 | -- | 0.0939 | 5.46 | -- | -- | -- | -- |
| 173.14 | 0.616 | 6.97 | 1.13 | 1.23 | -- | -- | -- | 0.09 | 5.48 | -- | -- | -- | -- |
| 125.39 | 0.522 | 6.89 | 1.77 | -- | -2.91 | -- | -- | 0.516 | -- | 13.79 | 303 | -- | -- |
| 175.87 | 0.618 | 6.96 | -- | 0.853 | -1.66 | -- | -- | 0.154 | 6.33 | 1.598 | 161 | -- | -- |
| 252.36 | 0.742 | 6.98 | 1.17 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 206.68 | 0.673 | 6.99 | -- | 1.25 | -- | -- | -- | -0.0357 | 5.44 | -- | -- | -- | -- |
| 199.86 | 0.658 | 6.95 | -- | -- | -1.85 | -- | -- | 0.251 | -- | 19.8 | 290 | -- | -- |
| 288.42 | 0.793 | 7.01 | -- | -- | -- | -- | -- | -0.00954 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 3 | 107.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 4 | 107.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 8 | 108.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 18 | 110.05 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 19 | 110.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 25 | 110.51 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 41 | 111.62 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 64 | 113.13 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 80 | 113.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 101 | 114.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 104 | 114.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 119 | 114.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 125 | 114.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 126 | 114.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 160 | 115.57 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 171 | 115.75 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 191 | 116.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 196 | 116.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 212 | 116.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 360 | 117.90 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 564 | 119.42 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 680 | 120.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 839 | 120.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 853 | 121.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 892 | 121.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 982 | 121.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |