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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0440000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, Dof-type family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0477) R2 : 0.105
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.56 (0.639) R2dE : 0.1 R2E : 0.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.143 (0.1) R2dN8 : 0.00513 R2N8 : 0.00539
σ : 0.896
deviance : 370.27
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_____
C
peak time of C : --
E
wheather : wind
threshold : 4.857
memory length : 81
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.15
open length of G : 1.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
368.29 0.902 3.2 0.233 0.0856 7.03 0.277 14.1 -0.122 18.2 5 90 6 1
369.92 0.896 3.22 0.177 0.0839 4.83 0.17 -- -0.17 16.5 5.022 89 6.12 1.2
368.49 0.894 3.2 0.233 0.0856 7.04 -- 14.1 -0.122 18.2 5 90 6 1
368.92 0.895 3.2 0.191 0.0868 4.59 -- -- -0.124 18.5 4.8 80 6.13 1.18
368.88 0.895 3.2 0.233 -- 7.04 -- 14.1 -0.122 -- 5 90 6 1
410.55 0.95 3.21 0.184 0.017 -- 0.249 -- -0.149 16.9 -- -- -- --
410.7 0.949 3.2 0.185 0.0237 -- -- -- -0.147 14.2 -- -- -- --
369.32 0.895 3.2 0.19 -- 4.56 -- -- -0.122 -- 4.811 79 6.14 1.19
369.89 0.896 3.21 -- 0.085 4.6 -- -- -0.141 18.7 4.866 82 6.13 1.19
410.73 0.947 3.2 0.184 -- -- -- -- -0.148 -- -- -- -- --
411.6 0.949 3.21 -- 0.0203 -- -- -- -0.168 14 -- -- -- --
370.27 0.896 3.2 -- -- 4.56 -- -- -0.143 -- 4.857 81 6.15 1.2
411.62 0.947 3.21 -- -- -- -- -- -0.168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 368.29 wind 5 90 > th dose independent rect. 6 1
2 368.29 wind 5 90 > th dose dependent rect. 6 1
13 375.82 wind 5 10 > th dose independent rect. 7 1
23 380.36 atmosphere 995 90 > th dose dependent rect. 19 19
28 380.46 wind 1 90 < th dose dependent rect. 14 1
29 380.59 atmosphere 1000 30 > th dose independent rect. 19 19
44 381.84 wind 3 10 < th dose independent rect. 16 1
51 382.21 humidity 50 30 < th dose dependent rect. 15 1
63 382.86 humidity 50 10 < th dose independent rect. 15 1
73 383.83 atmosphere 995 270 > th dose dependent rect. 16 21
80 384.21 atmosphere 995 30 > th dose dependent rect. 8 23
88 384.55 radiation 20 90 > th dose independent rect. 6 1
102 384.55 radiation 20 90 > th dose dependent rect. 6 1
140 385.35 humidity 70 90 < th dose dependent rect. 14 1
144 385.47 atmosphere 1000 30 > th dose independent rect. 8 23
149 385.56 atmosphere 1000 30 < th dose independent rect. 19 19
158 385.86 temperature 15 90 > th dose dependent rect. 14 14
159 385.89 atmosphere 1000 90 > th dose independent rect. 19 11
179 386.17 temperature 10 270 > th dose dependent rect. 21 11
190 386.55 atmosphere 1000 10 > th dose independent sin 8 NA
192 386.59 temperature 10 270 > th dose dependent rect. 12 14
193 386.60 atmosphere 1000 10 < th dose independent sin 8 NA
195 386.62 temperature 30 90 < th dose independent rect. 18 20
196 386.66 atmosphere 995 90 > th dose dependent rect. 3 11
240 387.22 temperature 30 90 > th dose independent rect. 18 22
242 387.25 temperature 15 90 > th dose dependent rect. 14 19
257 387.39 atmosphere 995 90 > th dose dependent rect. 23 15
274 387.49 temperature 10 270 > th dose dependent rect. 11 22
280 387.54 temperature 30 90 < th dose dependent rect. 8 22
282 387.55 radiation 10 90 > th dose independent rect. 14 18
288 387.59 wind 5 90 < th dose dependent rect. 15 2
295 387.72 wind 3 10 < th dose dependent rect. 16 1
312 387.83 radiation 10 270 > th dose independent rect. 12 20
335 387.87 temperature 15 1440 > th dose independent rect. 15 5
337 387.87 atmosphere 995 270 > th dose dependent rect. 1 12
345 387.93 radiation 10 90 < th dose independent rect. 7 1
346 387.93 atmosphere 995 10 > th dose dependent rect. 16 23
354 387.97 atmosphere 1015 10 < th dose dependent rect. 14 19
362 388.03 temperature 25 4320 < th dose independent rect. 23 15
399 388.19 radiation 1 90 > th dose dependent rect. 14 18
404 388.22 atmosphere 1015 270 < th dose dependent rect. 22 18
412 388.30 temperature 30 90 < th dose independent rect. 8 6
440 388.34 temperature 25 4320 > th dose independent rect. 23 16
441 388.34 temperature 10 720 > th dose dependent rect. 13 19
454 388.38 temperature 30 90 < th dose dependent rect. 18 21
460 388.43 atmosphere 1000 90 < th dose independent rect. 21 12
514 388.54 atmosphere 1000 1440 < th dose independent rect. 20 2
528 388.58 atmosphere 1015 720 < th dose dependent rect. 20 12
531 388.61 temperature 15 270 > th dose independent rect. 21 11
560 388.74 atmosphere 1000 720 < th dose independent rect. 19 7
567 388.76 temperature 30 90 > th dose independent rect. 8 8
585 388.77 temperature 15 1440 > th dose independent rect. 10 5
633 388.91 radiation 20 4320 > th dose independent rect. 11 6
651 388.92 atmosphere 1000 720 < th dose independent rect. 20 5
703 389.00 atmosphere 1000 10 > th dose independent rect. 20 11
713 389.03 temperature 25 4320 > th dose independent rect. 23 2
718 389.06 temperature 25 4320 < th dose independent sin 6 NA
720 389.07 temperature 25 4320 < th dose independent rect. 23 2
761 389.22 temperature 15 270 > th dose independent rect. 12 14
780 389.29 temperature 25 4320 > th dose independent rect. 22 4
781 389.29 temperature 25 4320 < th dose independent rect. 22 7
808 389.35 radiation 20 4320 > th dose independent sin 16 NA
822 389.39 temperature 30 4320 < th dose dependent rect. 15 1
832 389.43 atmosphere 1015 720 < th dose dependent rect. 5 3
842 389.45 atmosphere 995 720 > th dose dependent rect. 1 5
849 389.46 atmosphere 1015 10 < th dose dependent rect. 14 22
856 389.49 temperature 25 4320 > th dose independent sin 6 NA
857 389.49 radiation 30 4320 > th dose independent rect. 13 3
864 389.50 atmosphere 995 720 > th dose dependent rect. 2 3
876 389.53 atmosphere 995 30 > th dose dependent rect. 9 5
882 389.54 temperature 30 720 < th dose dependent rect. 17 3
901 389.55 temperature 25 4320 < th dose independent rect. 11 19
944 389.63 atmosphere 1015 90 < th dose dependent rect. 13 23
968 389.66 temperature 15 90 > th dose dependent rect. 13 22
973 389.67 temperature 30 720 < th dose dependent rect. 18 1
990 389.69 temperature 25 4320 > th dose dependent rect. 23 1
991 389.69 wind 1 10 < th dose dependent rect. 14 2