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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0496000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, Dof-type family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.93 (0.0692) R2 : 0.423
β1 : -0.325 (0.344) R2dD : 0.00232 R2D : -0.0232
β2 : 1.16 (0.186) R2dC : 0.0731 R2C : 0.156
β3 : 1.98 (0.256) R2dE : 0.135 R2E : 0.207
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.6 (1.61) R2dD*E : 0.145 R2D*E : 0.0663
γ1 : 0.488 (0.162) R2dN8 : 0.0214 R2N8 : 0.0532
σ : 1.21
deviance : 673.7
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_____
C
peak time of C : 13.1
E
wheather : temperature
threshold : 22.52
memory length : 697
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.6
open length of G : 2.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
670.69 1.22 4.94 -0.33 1.15 1.87 1.09 -11 0.486 13 21.96 696 5.45 2.52
740.69 1.27 4.8 1.35 1.35 1.38 -0.117 -- 0.937 13.1 21.87 649 6.17 1.18
673.7 1.21 4.93 -0.325 1.16 1.98 -- -11.6 0.488 13.1 22.52 697 5.6 2.33
735.13 1.26 4.79 1.4 0.484 1.83 -- -- 0.995 13.7 14.8 690 5 3.32
726.92 1.26 4.98 -0.414 -- 2.7 -- -11.1 0.345 -- 21.54 686 5.6 2.4
790.99 1.32 4.72 1.63 1.9 -- -0.0679 -- 1.25 13 -- -- -- --
791.01 1.32 4.72 1.63 1.9 -- -- -- 1.25 13 -- -- -- --
734.42 1.26 4.8 1.34 -- 2.23 -- -- 1.01 -- 14.37 651 6.17 2.36
783.39 1.3 4.83 -- 0.222 2.17 -- -- 0.814 13.9 15.06 690 5.02 3.28
1016.56 1.49 4.75 1.56 -- -- -- -- 1.21 -- -- -- -- --
860.86 1.37 4.76 -- 1.88 -- -- -- 1.06 13 -- -- -- --
781.38 1.3 4.83 -- -- 2.36 -- -- 0.852 -- 14.59 658 6.1 2.27
1080.47 1.53 4.79 -- -- -- -- -- 1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 679.98 temperature 20 720 > th dose dependent rect. 5 3
7 689.38 temperature 25 720 > th dose independent rect. 6 2
43 706.05 atmosphere 1000 10 > th dose independent rect. 9 23
52 709.63 atmosphere 1000 90 > th dose independent rect. 6 12
62 711.86 atmosphere 1000 720 > th dose independent rect. 5 4
63 712.86 temperature 15 90 > th dose dependent rect. 6 12
64 713.18 temperature 15 10 > th dose dependent rect. 6 13
66 713.61 atmosphere 1000 270 > th dose independent rect. 4 13
69 713.83 temperature 30 720 < th dose dependent rect. 3 7
76 714.28 temperature 25 720 < th dose dependent rect. 4 3
78 714.49 temperature 10 270 > th dose dependent rect. 4 13
82 714.91 atmosphere 1000 90 < th dose independent rect. 24 22
85 715.21 temperature 25 720 < th dose dependent rect. 4 5
106 716.57 atmosphere 1000 90 > th dose independent rect. 17 23
110 716.85 atmosphere 1005 270 < th dose dependent sin 3 NA
115 717.02 atmosphere 1000 90 > th dose independent sin 0 NA
116 717.04 atmosphere 1000 90 < th dose independent sin 0 NA
120 717.30 atmosphere 1000 90 < th dose independent rect. 3 19
124 717.44 atmosphere 1000 90 < th dose independent rect. 5 17
127 717.50 atmosphere 1005 720 < th dose dependent rect. 3 9
132 717.59 atmosphere 1005 720 < th dose dependent rect. 5 6
137 717.69 temperature 25 720 < th dose dependent rect. 4 1
142 717.80 atmosphere 1000 10 < th dose independent rect. 24 22
146 717.82 atmosphere 1005 720 < th dose dependent rect. 1 11
154 717.96 atmosphere 1005 720 < th dose dependent rect. 7 2
157 718.01 radiation 40 43200 < th dose independent rect. 13 1
180 718.54 atmosphere 1000 90 < th dose independent rect. 7 15
229 719.61 humidity 80 43200 < th dose independent rect. 20 2
230 719.62 humidity 60 43200 < th dose independent rect. 11 2
233 719.66 humidity 80 43200 > th dose independent rect. 21 1
235 719.68 humidity 70 43200 < th dose dependent rect. 10 1
240 719.72 temperature 25 270 > th dose independent rect. 6 11
246 719.90 temperature 25 270 < th dose independent rect. 7 9
247 719.92 humidity 80 43200 < th dose dependent rect. 20 1
253 720.08 wind 3 43200 < th dose dependent rect. 21 1
257 720.29 wind 3 43200 > th dose independent rect. 20 1
263 720.39 atmosphere 1000 90 > th dose independent rect. 3 23
265 720.45 atmosphere 1005 270 < th dose dependent rect. 6 9
272 720.57 atmosphere 1000 10 < th dose independent rect. 4 18
274 720.59 wind 5 43200 < th dose dependent rect. 19 2
285 720.74 radiation 20 43200 > th dose independent rect. 15 1
291 720.79 atmosphere 1000 10 > th dose independent sin 23 NA
292 720.79 radiation 40 43200 > th dose independent rect. 13 1
298 720.84 atmosphere 1005 90 < th dose dependent rect. 24 18
314 721.09 radiation 40 43200 > th dose independent rect. 11 4
315 721.10 humidity 60 43200 > th dose independent rect. 11 1
321 721.16 radiation 40 43200 > th dose independent rect. 11 21
344 721.21 wind 3 43200 < th dose independent rect. 20 1
350 721.27 radiation 20 43200 < th dose independent rect. 13 3
369 721.53 radiation 40 43200 > th dose independent sin 17 NA
381 721.63 humidity 80 43200 < th dose independent rect. 17 6
430 721.74 radiation 40 43200 > th dose dependent rect. 12 1
435 721.80 radiation 20 43200 > th dose independent rect. 15 18
487 722.09 wind 3 43200 < th dose independent rect. 19 3
496 722.18 wind 3 43200 > th dose independent rect. 19 3
520 722.37 atmosphere 1000 10 < th dose independent rect. 8 14
524 722.40 radiation 40 43200 > th dose independent rect. 7 8
544 722.44 radiation 40 43200 > th dose independent no NA NA
684 722.48 radiation 30 43200 < th dose independent rect. 9 1
688 722.51 radiation 20 43200 > th dose independent sin 12 NA
727 722.75 humidity 60 43200 < th dose independent rect. 20 18
780 723.03 humidity 80 43200 > th dose independent rect. 20 3
785 723.05 temperature 25 30 > th dose independent rect. 6 11
819 723.10 radiation 40 43200 < th dose independent rect. 12 13
820 723.10 radiation 40 43200 < th dose independent rect. 12 15
828 723.12 radiation 40 43200 < th dose independent rect. 12 11
859 723.18 humidity 80 43200 < th dose independent rect. 19 4
880 723.22 temperature 25 4320 > th dose dependent rect. 6 3
923 723.38 radiation 20 43200 > th dose dependent sin 17 NA
927 723.39 atmosphere 1005 720 < th dose dependent sin 6 NA
995 723.53 humidity 80 43200 > th dose independent rect. 18 5