BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0496000 Os10g0496000|AK070563
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0496000 Zinc finger, Dof-type family protein 153 9e-38
Os07g0508900 Zinc finger, Dof-type family protein 75 4e-14
Os02g0673700 Zinc finger, Dof-type family protein 75 6e-14
Os07g0236700 Similar to Dof2 (Fragment) 74 9e-14
Os04g0678400 Zinc finger, Dof-type family protein 74 1e-13
Os01g0865800 Similar to AOBP (Ascorbate oxidase promoter-bi... 73 2e-13
Os05g0440000 Zinc finger, Dof-type family protein 73 2e-13
Os03g0764900 Similar to Zn finger protein (Fragment) 72 3e-13
Os03g0276300 72 3e-13
Os02g0707200 Similar to Zn finger protein (Fragment) 72 3e-13
Os06g0284500 Zinc finger, Dof-type family protein 72 4e-13
Os03g0585600 72 5e-13
Os12g0569900 Similar to Zn finger protein (Fragment) 71 6e-13
Os02g0252400 Similar to Zn finger protein (Fragment) 71 6e-13
Os02g0726300 Similar to AOBP (Ascorbate oxidase promoter-bi... 71 9e-13
Os05g0112200 Similar to Zn finger protein (Fragment) 70 1e-12
Os03g0821200 Similar to Zn finger protein (Fragment) 70 1e-12
Os01g0193300 70 2e-12
Os08g0490100 Similar to PBF protein 70 2e-12
Os09g0475800 Similar to Zn finger protein (Fragment) 68 7e-12
Os03g0619100 Zinc finger, Dof-type family protein 67 1e-11
Os12g0590700 67 2e-11
Os01g0263900 Zinc finger, Dof-type family protein 66 2e-11
Os01g0758200 Similar to Dof2 (Fragment) 64 8e-11
Os07g0685000 Similar to Dof3 gene (Fragment) 64 9e-11
>Os10g0496000 Zinc finger, Dof-type family protein
Length = 247
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 90/163 (55%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVXXXXXXXXXXXXXXXXXXXXX 144
SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV
Sbjct: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPVGGGRKNSKRAAGGGKAGATAS 144
Query: 145 XXXXXXXXXXXXXXXXXXXFPDLLRQMLMAPATAGGGGGYSIDLTXXXXXXXXXXXXXXX 204
FPDLLRQMLMAPATAGGGGGYSIDLT
Sbjct: 145 TAASAHVVAPAAAPPTSSSFPDLLRQMLMAPATAGGGGGYSIDLTAWQQMAAFAAPPQAA 204
Query: 205 XXXXXXXXXXXXXXXXXXNCGGGGVQYWNGWLQDDMPGLDGSC 247
NCGGGGVQYWNGWLQDDMPGLDGSC
Sbjct: 205 TGDVGGAVGAASTAAPDANCGGGGVQYWNGWLQDDMPGLDGSC 247
>Os07g0508900 Zinc finger, Dof-type family protein
Length = 359
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 36/39 (92%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
SANTKFCYYNNYS +QPR+ CKAC+R+WT GGTLR+VPV
Sbjct: 56 SANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPV 94
>Os02g0673700 Zinc finger, Dof-type family protein
Length = 375
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCYYNNYS QPRY CK CRR+WTEGG+LR+VPV
Sbjct: 81 STNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPV 119
>Os07g0236700 Similar to Dof2 (Fragment)
Length = 332
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCY+NNYS TQPR+ CKACRR+WT GG LR+VPV
Sbjct: 60 STNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPV 98
>Os04g0678400 Zinc finger, Dof-type family protein
Length = 207
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 35/39 (89%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCYYNNYS +QPR+ C+ACRR+WT GGTLRDVPV
Sbjct: 57 STNTKFCYYNNYSTSQPRHFCRACRRYWTHGGTLRDVPV 95
>Os01g0865800 Similar to AOBP (Ascorbate oxidase promoter-binding protein)
Length = 320
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 35/39 (89%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCYYNNYS +QPRY CK CRR+WT+GG+LR+VPV
Sbjct: 32 SPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPV 70
>Os05g0440000 Zinc finger, Dof-type family protein
Length = 327
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 35/39 (89%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCYYNNYS +QPRY CK CRR+WT+GG+LR+VPV
Sbjct: 45 SPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPV 83
>Os03g0764900 Similar to Zn finger protein (Fragment)
Length = 359
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 35/39 (89%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S+NTKFCYYNNY+ TQPR+ CK CRR+WT+GG LR+VP+
Sbjct: 86 SSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPI 124
>Os03g0276300
Length = 403
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 34/39 (87%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCYYNNYS +QPR+ CK CRR+WT GG+LR+VPV
Sbjct: 98 STNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPV 136
>Os02g0707200 Similar to Zn finger protein (Fragment)
Length = 281
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 35/39 (89%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S +TKFCYYNNYS +QPRY CK CRR+WT+GG+LR+VPV
Sbjct: 44 STHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPV 82
>Os06g0284500 Zinc finger, Dof-type family protein
Length = 289
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 36/39 (92%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S+NTKFCYYNNY+ +QPR+ CKACRR+WT+GG LR+VPV
Sbjct: 37 SSNTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPV 75
>Os03g0585600
Length = 371
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 34/39 (87%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCYYNNYS +QPR+ CK CRR+WT+GG LR+VPV
Sbjct: 55 SPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPV 93
>Os12g0569900 Similar to Zn finger protein (Fragment)
Length = 348
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 34/39 (87%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCY+NNYS +QPR+ CKACRR+WT GG LR+VPV
Sbjct: 101 STNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPV 139
>Os02g0252400 Similar to Zn finger protein (Fragment)
Length = 373
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S TKFCYYNNYS QPRY C+ CRR+WT+GG+LR+VPV
Sbjct: 52 SIKTKFCYYNNYSMAQPRYFCRECRRYWTQGGSLRNVPV 90
>Os02g0726300 Similar to AOBP (Ascorbate oxidase promoter-binding protein)
Length = 282
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 35/39 (89%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCYYNNY+ +QPR+ CK+CRR+WT+GG LR+VPV
Sbjct: 52 STNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPV 90
>Os05g0112200 Similar to Zn finger protein (Fragment)
Length = 290
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 34/39 (87%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCY+NNYS +QPR+ C+ACRR+WT GG LR+VPV
Sbjct: 47 STNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPV 85
>Os03g0821200 Similar to Zn finger protein (Fragment)
Length = 414
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCY+NNYS +QPR+ CK CRR+WT GG LR+VPV
Sbjct: 125 STNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPV 163
>Os01g0193300
Length = 215
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 33/39 (84%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S NTKFCYYNNY+ QPR+ CKACRR+WT GG LR+VPV
Sbjct: 37 STNTKFCYYNNYNLAQPRHFCKACRRYWTRGGALRNVPV 75
>Os08g0490100 Similar to PBF protein
Length = 276
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 35/39 (89%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S +TKFCYYNNY+ +QPR+ CK CRR+WT+GGTLR+VPV
Sbjct: 68 SRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPV 106
>Os09g0475800 Similar to Zn finger protein (Fragment)
Length = 230
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 36/39 (92%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S +TKFCYYNNY+ +QPR+ CK+CRR+WT+GG+LR+VPV
Sbjct: 49 SRDTKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPV 87
>Os03g0619100 Zinc finger, Dof-type family protein
Length = 202
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 35/39 (89%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S +TKFCYYNNY+ +QPR+ C+ACRR+WT GG+LR+VP+
Sbjct: 56 SHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPI 94
>Os12g0590700
Length = 265
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 34/39 (87%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S +TKFCYYNNY+ QPR+ C+ACRR+WT GG+LR+VP+
Sbjct: 58 SRDTKFCYYNNYNTAQPRHFCRACRRYWTLGGSLRNVPI 96
>Os01g0263900 Zinc finger, Dof-type family protein
Length = 496
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S +TKFCYYNNY+ QPR+ CK C+R+WT GGT+R+VPV
Sbjct: 112 SMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPV 150
>Os01g0758200 Similar to Dof2 (Fragment)
Length = 211
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 32/39 (82%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S +TKFCY+NNY+ QPR+ CKAC R+WT GG LR+VPV
Sbjct: 116 SRDTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPV 154
>Os07g0685000 Similar to Dof3 gene (Fragment)
Length = 476
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 34/39 (87%)
Query: 85 SANTKFCYYNNYSRTQPRYLCKACRRHWTEGGTLRDVPV 123
S +TKFCYYNNY+ QPR+ CK+C+R+WT GG++R++PV
Sbjct: 115 SMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPV 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.141 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,482,572
Number of extensions: 104980
Number of successful extensions: 661
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 660
Number of HSP's successfully gapped: 27
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)