Os07g0685000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dof3 gene (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os07g0685000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dof3 gene (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.07 | 0.57 | 10.1 | 0.532 | 0.971 | -7.9 | 1.92 | 3.44 | 0.151 | 6.27 | 7.95 | 245 | 18.2 | 7.92 |
| 156.69 | 0.583 | 10.1 | 0.525 | 0.975 | -8.35 | 3.11 | -- | 0.144 | 4.38 | 5.875 | 226 | 18.3 | 8.05 |
| 148.22 | 0.567 | 10.1 | 0.556 | 0.867 | -8.11 | -- | 3.71 | 0.135 | 6.19 | 7.516 | 221 | 18.4 | 7.93 |
| 166.71 | 0.601 | 10.1 | 0.439 | 0.926 | -7.94 | -- | -- | 0.172 | 6.13 | 6.429 | 193 | 18.5 | 8.17 |
| 172.38 | 0.611 | 10.1 | 0.47 | -- | -8.14 | -- | 3.34 | 0.184 | -- | 7.289 | 200 | 18.3 | 8 |
| 845.08 | 1.36 | 10.1 | 0.213 | 6.26 | -- | -1.05 | -- | -0.102 | 11.4 | -- | -- | -- | -- |
| 849.81 | 1.37 | 10.1 | 0.17 | 6.26 | -- | -- | -- | -0.107 | 11.4 | -- | -- | -- | -- |
| 194.09 | 0.649 | 10.1 | 0.377 | -- | -8.01 | -- | -- | 0.172 | -- | 6.898 | 191 | 18.3 | 8.08 |
| 169.08 | 0.606 | 10.1 | -- | 0.927 | -7.73 | -- | -- | 0.0847 | 6.84 | 6.597 | 188 | 18.5 | 8.17 |
| 3309.33 | 2.69 | 10.2 | 0.00699 | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
| 850.58 | 1.36 | 10.1 | -- | 6.26 | -- | -- | -- | -0.125 | 11.4 | -- | -- | -- | -- |
| 197.77 | 0.655 | 10.2 | -- | -- | -7.96 | -- | -- | 0.121 | -- | 6.489 | 192 | 18.3 | 8.08 |
| 3309.33 | 2.69 | 10.2 | -- | -- | -- | -- | -- | -0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 20 | 312.91 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 22 | 316.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 30 | 339.51 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 34 | 342.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 38 | 342.24 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 39 | 342.24 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 40 | 342.43 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 46 | 343.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 49 | 344.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 52 | 345.29 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 16 |
| 53 | 345.29 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 61 | 346.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 8 |
| 62 | 346.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 68 | 349.43 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 71 | 350.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 75 | 352.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 7 |
| 76 | 352.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 77 | 352.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 78 | 352.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 79 | 352.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 80 | 352.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 81 | 352.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 91 | 354.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 97 | 358.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 100 | 361.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 17 |
| 101 | 361.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 108 | 364.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 109 | 364.62 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 113 | 367.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 116 | 368.76 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 120 | 370.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 152 | 376.33 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 175 | 380.47 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 208 | 385.13 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 220 | 388.43 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 224 | 389.03 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 236 | 390.79 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 252 | 394.21 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 253 | 394.72 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 255 | 395.03 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 259 | 395.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 261 | 395.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 262 | 395.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 264 | 395.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 265 | 395.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 270 | 395.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 271 | 395.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 275 | 396.39 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 276 | 396.45 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 332 | 403.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 348 | 405.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 349 | 405.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 352 | 406.51 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 354 | 406.95 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 433 | 417.15 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 440 | 418.20 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 445 | 418.92 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 473 | 421.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 17 |
| 474 | 421.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 476 | 421.79 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 478 | 421.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 486 | 422.50 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 487 | 422.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 17 |
| 488 | 422.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 492 | 422.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 7 |
| 493 | 422.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 504 | 423.91 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 518 | 425.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 523 | 425.73 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 7 |
| 524 | 425.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 7 |
| 598 | 430.17 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 633 | 432.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 7 |
| 642 | 433.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 19 |
| 643 | 433.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 645 | 433.25 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 651 | 433.50 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 659 | 434.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 19 |
| 660 | 434.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 19 |
| 661 | 434.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 669 | 435.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 5 |
| 670 | 435.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 5 |
| 678 | 435.51 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 680 | 435.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 682 | 435.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 683 | 435.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 686 | 435.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 687 | 435.65 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 689 | 435.65 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 693 | 435.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 694 | 435.69 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 697 | 435.79 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 701 | 435.86 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 703 | 435.93 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 708 | 436.28 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 5 |
| 733 | 437.28 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 734 | 437.29 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 735 | 437.35 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 747 | 438.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 748 | 438.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 788 | 439.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 791 | 440.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 812 | 440.46 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 826 | 440.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 866 | 443.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 5 |
| 889 | 444.17 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 897 | 444.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 946 | 446.56 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 8 |
| 947 | 446.56 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 949 | 446.66 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 982 | 448.47 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 989 | 448.64 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 15 |