BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0179700 Os11g0179700|Os11g0179700
(155 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0179700 Plant disease resistance response protein fami... 322 5e-89
Os11g0179500 197 2e-51
Os11g0180000 Plant disease resistance response protein fami... 169 8e-43
Os11g0464600 146 7e-36
Os11g0179100 Plant disease resistance response protein fami... 125 1e-29
Os12g0174700 Plant disease resistance response protein fami... 125 2e-29
Os11g0179400 108 2e-24
Os07g0107500 Plant disease resistance response protein fami... 105 9e-24
Os11g0178800 Plant disease resistance response protein fami... 105 1e-23
Os11g0179000 Plant disease resistance response protein fami... 102 1e-22
Os03g0809000 Plant disease resistance response protein fami... 99 1e-21
Os11g0644750 Plant disease resistance response protein fami... 94 6e-20
Os07g0107100 Plant disease resistance response protein fami... 91 3e-19
Os08g0375400 Plant disease resistance response protein fami... 86 1e-17
Os11g0645300 Plant disease resistance response protein fami... 79 1e-15
Os07g0107300 Plant disease resistance response protein fami... 79 2e-15
Os11g0214400 Plant disease resistance response protein fami... 71 4e-13
Os10g0398100 Plant disease resistance response protein fami... 68 3e-12
Os11g0215100 Plant disease resistance response protein fami... 65 2e-11
Os11g0214900 Plant disease resistance response protein fami... 64 4e-11
Os07g0106900 Plant disease resistance response protein fami... 64 4e-11
Os03g0143900 Plant disease resistance response protein fami... 63 8e-11
>Os11g0179700 Plant disease resistance response protein family protein
Length = 155
Score = 322 bits (826), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MCLYKAKCVYVVSPPNKTSPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIG 60
MCLYKAKCVYVVSPPNKTSPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIG
Sbjct: 1 MCLYKAKCVYVVSPPNKTSPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIG 60
Query: 61 FLQAMNIVLTAGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSN 120
FLQAMNIVLTAGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSN
Sbjct: 61 FLQAMNIVLTAGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSN 120
Query: 121 GLDAIVEYNHNHSKIKNGKEISTNAYDLPCAGSQL 155
GLDAIVEYNHNHSKIKNGKEISTNAYDLPCAGSQL
Sbjct: 121 GLDAIVEYNHNHSKIKNGKEISTNAYDLPCAGSQL 155
>Os11g0179500
Length = 182
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/122 (79%), Positives = 102/122 (83%)
Query: 8 CVYVVSPPNKTSPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNI 67
V VV+PPN TS T G V VMDDPLTE PDP SK VG AQGMY+SSDQ RIGFLQAMNI
Sbjct: 56 AVRVVNPPNNTSLTFLGMVVVMDDPLTERPDPASKLVGHAQGMYVSSDQARIGFLQAMNI 115
Query: 68 VLTAGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVE 127
VLTAG YNGSV+ VLGSNHISD I EMP++GGT FRFARGYAQARTYFLD NGLDAIVE
Sbjct: 116 VLTAGSYNGSVVIVLGSNHISDIIHEMPILGGTGHFRFARGYAQARTYFLDPNGLDAIVE 175
Query: 128 YN 129
YN
Sbjct: 176 YN 177
>Os11g0180000 Plant disease resistance response protein family protein
Length = 185
Score = 169 bits (428), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 96/122 (78%)
Query: 8 CVYVVSPPNKTSPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNI 67
V VV P + +S + FG + VMDDPLTEGP+P SKP+GRAQG+Y+ SDQ ++GFLQAMN+
Sbjct: 59 AVRVVDPVDPSSRSFFGMINVMDDPLTEGPEPESKPMGRAQGLYMGSDQAKLGFLQAMNL 118
Query: 68 VLTAGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVE 127
V T G YNGSV+TVLG N D +REMPV+GGT AFRFARGYAQART+ LD DAIVE
Sbjct: 119 VFTDGTYNGSVVTVLGRNCPFDDVREMPVIGGTGAFRFARGYAQARTHTLDLKTGDAIVE 178
Query: 128 YN 129
YN
Sbjct: 179 YN 180
>Os11g0464600
Length = 160
Score = 146 bits (368), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 82/104 (78%)
Query: 26 VYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSVITVLGSN 85
+YVMDD LTEGP+P S+PVGRAQGMY+S+ ++G LQ MN+V T GPYNGSV+TVLG N
Sbjct: 52 LYVMDDALTEGPEPESQPVGRAQGMYMSTGLAKLGLLQVMNLVFTHGPYNGSVVTVLGRN 111
Query: 86 HISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
++REMPV+GGT FRF+RGYAQ +T+ LD DAIVEYN
Sbjct: 112 GPFGNVREMPVIGGTGTFRFSRGYAQLKTHTLDLKKNDAIVEYN 155
>Os11g0179100 Plant disease resistance response protein family protein
Length = 177
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Query: 13 SPPNKTSPTSFGTVYVMDDPLTEGPD-PRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTA 71
+P S T FG V V+DDPLT+GP+ S+ VGRAQGMY+++ + + + AMN V
Sbjct: 53 APTTNASATGFGAVVVIDDPLTDGPNLTASRLVGRAQGMYVAAGKDALSLMMAMNFVFAG 112
Query: 72 -GPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
GPYNGS + +LG+N ++REMPVVGGT FRFARGY QA T++ ++ DA VEYN
Sbjct: 113 DGPYNGSSLAILGANPAERAVREMPVVGGTGVFRFARGYCQATTWWFNATTGDATVEYN 171
>Os12g0174700 Plant disease resistance response protein family protein
Length = 184
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 18 TSPTSFGTVYVMDDPLTEGPDPR-SKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNG 76
+S + FG V V+DDPLT GPD S PVGRAQG Y+S+ + + L MN V +G YNG
Sbjct: 67 SSASFFGAVVVIDDPLTSGPDLNASSPVGRAQGTYVSAGKDTVALLMNMNFVFQSGRYNG 126
Query: 77 SVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
S + ++G N + ++REM VVGGT FR+ARGYAQART+ LD DA VEYN
Sbjct: 127 STVAIMGRNEVFAAVREMAVVGGTGVFRWARGYAQARTHTLDMKTGDATVEYN 179
>Os11g0179400
Length = 178
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 81/120 (67%), Gaps = 5/120 (4%)
Query: 13 SPPNKTSPTSFGTVYVMDDPLTEGPD--PRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLT 70
+P ++ S T FGTVYV+DDPLT+GP S+ VG AQGMY+S+ + + L AM+ V
Sbjct: 55 APTSRASATVFGTVYVIDDPLTDGPSLTAPSRLVGHAQGMYVSAGKETMSLLMAMSFVFA 114
Query: 71 AG-PYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
A PYNGS + + G N + + E+PVVGGT AFRFARGY +A TY+ ++ G DA V Y+
Sbjct: 115 ADEPYNGSSVAIFGPNP-ARPVSEIPVVGGTGAFRFARGYCRATTYWYNAAG-DATVPYD 172
>Os07g0107500 Plant disease resistance response protein family protein
Length = 220
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 23 FGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSVITVL 82
FG V VMDD LTEGP S VGR QG Y+ SD L MN+VLTAGPY GS +T+L
Sbjct: 86 FGQVVVMDDVLTEGPSRSSPRVGRTQGFYVFSDMNVPALLFCMNVVLTAGPYAGSTVTIL 145
Query: 83 GSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
G +HI+ +RE+ VVGGT AFR A GY RT DA++E +
Sbjct: 146 GRDHITQPLRELSVVGGTGAFRMATGYVLWRTASWQFRA-DAVLELD 191
>Os11g0178800 Plant disease resistance response protein family protein
Length = 176
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 66/111 (59%)
Query: 19 SPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSV 78
S T FG V +DDPLT S VGRAQG Y +DQ G L MN V TAG + GS
Sbjct: 61 SSTFFGAVVAIDDPLTTDAASSSSEVGRAQGSYTFADQKTFGLLMNMNFVFTAGDHKGST 120
Query: 79 ITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
+ ++G N + ++REM +VGG+ FR ARGY +ART +N + IVEY
Sbjct: 121 LAIVGRNEVLSAVREMSIVGGSGKFRMARGYVEARTVDSGANSGETIVEYT 171
>Os11g0179000 Plant disease resistance response protein family protein
Length = 178
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 19 SPTSFGTVYVMDDPLTEGPDPRS--KPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNG 76
S T FG V +DDPLT P + + VGRAQG Y +DQ IG L MN V TAG +NG
Sbjct: 61 SSTYFGAVVAIDDPLTSSPAAAAAGEVVGRAQGTYTFADQRVIGLLMDMNFVFTAGDHNG 120
Query: 77 SVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
S + ++G N + +REM VVGG+ FR ARGYA+ART + IVEY
Sbjct: 121 SSLAIMGRNEVMSPVREMSVVGGSGKFRMARGYAEARTVDSGFKSGETIVEYT 173
>Os03g0809000 Plant disease resistance response protein family protein
Length = 186
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 15 PNKTSPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPY 74
P +P F T+YV+DD LTEGP SK VG AQGMY+S+ + + + ++ LT GPY
Sbjct: 65 PKPDNPVPFSTIYVVDDLLTEGPQRESKVVGNAQGMYISTAKKGLTLVLGIDFELTDGPY 124
Query: 75 NGSVITVLGSNHI-SDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
GS V N + + RE+ +VGG FR ARG+A +T +LD+ DAI+EYN
Sbjct: 125 KGSSFVVYSRNPVMQGNGRELAIVGGRGLFRMARGFALLQTVYLDNVNGDAIIEYN 180
>Os11g0644750 Plant disease resistance response protein family protein
Length = 160
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 6 AKCVYVVSPPNKTSPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAM 65
A V VV P FG VMDD LTEGP S +GRAQG Y+ + + + M
Sbjct: 42 ASAVQVVRGPRGM----FGNTVVMDDVLTEGPAATSSVLGRAQGQYIVASTGSMDLMVTM 97
Query: 66 NIVLTAGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAI 125
N+VL++GP+ GS +TV+G + ++RE+ VVGGT FR ARGY RT D LD
Sbjct: 98 NVVLSSGPFAGSSVTVVGRDDTGAAVRELTVVGGTGQFRMARGYVLWRTIRPDLLELDVY 157
Query: 126 V 126
V
Sbjct: 158 V 158
>Os07g0107100 Plant disease resistance response protein family protein
Length = 209
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 8 CVYVVSPPNKTSPT-----SFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFL 62
V VV P +P+ +FG ++DD +TEGP S+ VGRAQG Y+ + R F+
Sbjct: 55 SVVVVKGPGPANPSMSPGNNFGDTVIIDDVVTEGPSLASREVGRAQGTYMLASMARPVFI 114
Query: 63 QAMNIVLTAGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGL 122
+ +VLT GPYNGS I + G + S+ +RE+ VVGG+ R A G+ RT ++S L
Sbjct: 115 VDITVVLTDGPYNGSTILIAGRDDTSEEVRELAVVGGSGMLRRASGHVLWRTAKVESK-L 173
Query: 123 DAIVEYN 129
A++E +
Sbjct: 174 HAVLELD 180
>Os08g0375400 Plant disease resistance response protein family protein
Length = 207
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 7 KCVYVVSPPNKTSP-TSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAM 65
+ ++ PP+ + P +FG +DD +TEGP S VGRAQG Y+ S Q + A+
Sbjct: 66 RLIWGAGPPHASMPGRAFGDTVAVDDLVTEGPSIASAAVGRAQGTYMLSSQREAVLVVAI 125
Query: 66 NIVLTA--GPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQART 114
+ LT+ GPYNGS + + G + + D RE+ VVGGT A R A GY RT
Sbjct: 126 TVALTSAGGPYNGSNLVIAGRDRVRDETRELAVVGGTGALRGAAGYVLWRT 176
>Os11g0645300 Plant disease resistance response protein family protein
Length = 170
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 8 CVYVVSPPNKTSPTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNI 67
V VV+ P + FG V+DD LT S VGRA+G Y+ + L M +
Sbjct: 50 AVQVVNGPR----SHFGDTIVIDDVLTAAASRSSAAVGRAKGQYVWASSGNPELLVTMEV 105
Query: 68 VLTAGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVE 127
VLT+GP+ GS +TV+G + I+ +RE+ VVGGT FR A GY +T LD +AI+E
Sbjct: 106 VLTSGPFAGSSVTVVGRDDIAAPVRELSVVGGTGEFRMASGYVLWKTVSLDHP--NAILE 163
Query: 128 YN 129
+
Sbjct: 164 LD 165
>Os07g0107300 Plant disease resistance response protein family protein
Length = 229
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 53/94 (56%)
Query: 21 TSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSVIT 80
T FG V+DD LTE S VGRAQG Y+ S + +N+ TAG NGS I
Sbjct: 63 TGFGDTTVVDDALTETSSATSPEVGRAQGFYMMSSLSSPTLMMCVNLYFTAGENNGSTIA 122
Query: 81 VLGSNHISDSIREMPVVGGTSAFRFARGYAQART 114
V+G + + ++RE+ VVGGT FR A GY +T
Sbjct: 123 VIGHDDTTATVRELSVVGGTGKFRMATGYVVWKT 156
>Os11g0214400 Plant disease resistance response protein family protein
Length = 192
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 20 PTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSVI 79
P FG + V+++ LTEGPD S VG AQG + + + +M++V+ AG + GS +
Sbjct: 79 PRQFGDIVVLNNALTEGPDAGSARVGTAQGFGVRVSEGGLVTDLSMHLVMEAGEHRGSSV 138
Query: 80 TVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTY 115
+ G + +RE VVGGT FR ARGY + +Y
Sbjct: 139 AIKGRIDVGVGVRESVVVGGTGRFRLARGYMASSSY 174
>Os10g0398100 Plant disease resistance response protein family protein
Length = 188
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 7/108 (6%)
Query: 12 VSPPNKTSP-TSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLT 70
V+PP ++ +S G V V+DD L EG DP S+ VGRAQG+ + A+ +L+
Sbjct: 58 VAPPARSGDGSSLGFVGVVDDMLREGADPASRLVGRAQGVTAGTSLAAADGAGAITTMLS 117
Query: 71 -----AGPYNGSVITVLGSNHISDSIREMPVVGGTSAFRFARGYAQAR 113
GPY GS + V G + ++ E PVVGGT FR ARG+ +R
Sbjct: 118 LAFTEEGPYAGSTLQVFG-RAVLGTVMERPVVGGTGKFRMARGHTLSR 164
>Os11g0215100 Plant disease resistance response protein family protein
Length = 181
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 23 FGTVYVMDDPLTEGPDPRSKPVG-RAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSVITV 81
FG +Y +DDPLT+G D S RA+G Y+ S + L + + TAG + G ++V
Sbjct: 69 FGDLYAIDDPLTDGADAASSAAVGRARGFYMFSSRTDSALLFSATMEFTAGVHRGGAVSV 128
Query: 82 LGSNHISDSIREMPVVGGTSAFRFARGYAQARTYFLDSNGLDAIVEYN 129
L + I D +RE+PVVGG R A GY RT+ ++ +A+++ +
Sbjct: 129 LARDAILDEVRELPVVGGAGVLRGAAGYGLLRTHSFNATTNNAVLQID 176
>Os11g0214900 Plant disease resistance response protein family protein
Length = 189
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%)
Query: 20 PTSFGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSVI 79
P FG + +++ LTEGP S VG AQG + + + ++++VL AG + GS +
Sbjct: 76 PRQFGDIVALNNALTEGPSAGSARVGTAQGFAVRVSEGGVLSDLSLHMVLEAGEHRGSSV 135
Query: 80 TVLGSNHISDSIREMPVVGGTSAFRFARGYAQARTY 115
T G + RE V+GGT FR ARGY + Y
Sbjct: 136 TAKGRIDMDAGERESVVIGGTGRFRLARGYMVTKNY 171
>Os07g0106900 Plant disease resistance response protein family protein
Length = 204
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%)
Query: 41 SKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSVITVLGSNHISDSIREMPVVGGT 100
SKPVGRAQG Y + F+ ++ +VLT GPY GS I + G + IS+ +RE+ VVGGT
Sbjct: 81 SKPVGRAQGSYTLACLRAPVFVVSITLVLTDGPYKGSTILIAGRDDISEEVRELAVVGGT 140
Query: 101 SAFRFARGY 109
R A G+
Sbjct: 141 GKLRRATGH 149
>Os03g0143900 Plant disease resistance response protein family protein
Length = 275
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 23 FGTVYVMDDPLTEGPDPRSKPVGRAQGMYLSSDQVRIGFLQAMNIVLTAGPYNGSVITVL 82
FGT+ V+DD LT GPD ++P+GRAQG+Y++S + A ++ G Y G +
Sbjct: 162 FGTITVIDDVLTSGPDLGAQPLGRAQGVYVASAADGSAQMMAFTAMMEGGEY-GDTLNFF 220
Query: 83 GSNHISDSIREMPVVGGTSAFRFARGYAQAR 113
G + ++ ++ + GGT F+ A G+A+ R
Sbjct: 221 GVYKVGSTMCKLSITGGTGKFKGACGFAEVR 251
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,540,275
Number of extensions: 217652
Number of successful extensions: 426
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 22
Length of query: 155
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 63
Effective length of database: 12,232,113
Effective search space: 770623119
Effective search space used: 770623119
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)