Os08g0375400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os08g0375400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1062.24 | 1.53 | 9.81 | -7.96 | 0.844 | -6.04 | 4.27 | -5.5 | -1.19 | 8.79 | 75 | 1323 | -- | -- |
| 1124.95 | 1.56 | 9.9 | -8.74 | 0.809 | -6.26 | 4.31 | -- | -1.38 | 8.14 | 74.5 | 1331 | -- | -- |
| 1121.43 | 1.56 | 9.82 | -7.82 | 0.739 | -5.98 | -- | -5.32 | -1.19 | 8.81 | 75 | 1343 | -- | -- |
| 1179.37 | 1.6 | 9.89 | -8.62 | 0.79 | -6.21 | -- | -- | -1.4 | 9.13 | 74.76 | 1323 | -- | -- |
| 1146.32 | 1.58 | 9.83 | -7.78 | -- | -5.89 | -- | -5.45 | -1.15 | -- | 74.27 | 1392 | -- | -- |
| 2338.75 | 2.27 | 9.7 | -7.74 | 0.917 | -- | 4.47 | -- | -0.553 | 6.45 | -- | -- | -- | -- |
| 2385.61 | 2.29 | 9.71 | -7.68 | 0.967 | -- | -- | -- | -0.571 | 5.57 | -- | -- | -- | -- |
| 1208.67 | 1.62 | 9.92 | -8.61 | -- | -6.17 | -- | -- | -1.39 | -- | 74.49 | 1363 | -- | -- |
| 2884.42 | 2.5 | 10 | -- | 0.427 | -6.9 | -- | -- | -0.654 | 8.7 | 88 | 1458 | -- | -- |
| 2434.21 | 2.31 | 9.73 | -7.65 | -- | -- | -- | -- | -0.548 | -- | -- | -- | -- | -- |
| 3941.65 | 2.94 | 9.52 | -- | 0.847 | -- | -- | -- | 0.284 | 5.96 | -- | -- | -- | -- |
| 2821.65 | 2.47 | 9.71 | -- | -- | -7.79 | -- | -- | -0.742 | -- | 82.11 | 2617 | -- | -- |
| 3978.82 | 2.94 | 9.53 | -- | -- | -- | -- | -- | 0.301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1083.00 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 52 | 1109.04 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 69 | 1111.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 78 | 1112.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 85 | 1112.93 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 99 | 1114.96 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 123 | 1118.78 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 162 | 1124.29 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 172 | 1126.10 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 182 | 1128.15 | humidity | 60 | 1440 | > th | dose dependent | sin | 19 | NA |
| 194 | 1129.05 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 218 | 1130.01 | humidity | 50 | 1440 | > th | dose dependent | sin | 17 | NA |
| 353 | 1147.82 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 363 | 1148.75 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 400 | 1153.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 22 |
| 405 | 1154.29 | humidity | 90 | 1440 | < th | dose dependent | sin | 15 | NA |
| 439 | 1156.95 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 444 | 1157.54 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 496 | 1162.74 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 517 | 1164.70 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 527 | 1165.77 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 548 | 1167.60 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 551 | 1167.68 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 691 | 1181.17 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 700 | 1181.69 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 735 | 1185.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 785 | 1190.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 829 | 1194.28 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 841 | 1196.06 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 899 | 1199.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 926 | 1201.30 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 944 | 1201.84 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 992 | 1203.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 995 | 1203.68 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |