Os11g0178800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os11g0178800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.66 | 0.588 | 8.06 | -0.054 | 0.86 | 0.885 | 0.0013 | 3.35 | 0.235 | 0.451 | 29.9 | 10 | -- | -- |
| 167.12 | 0.607 | 8 | 0.521 | 0.904 | 0.83 | 1.09 | -- | 0.366 | 0.823 | 30.9 | 15 | -- | -- |
| 156.66 | 0.583 | 8.06 | -0.0541 | 0.86 | 0.885 | -- | 3.35 | 0.235 | 0.451 | 29.9 | 10 | -- | -- |
| 171.93 | 0.611 | 8 | 0.5 | 0.891 | 0.91 | -- | -- | 0.362 | 0.543 | 31.5 | 14 | -- | -- |
| 189.96 | 0.642 | 8.02 | 0.133 | -- | 1.69 | -- | 3.5 | 0.396 | -- | 30 | 2 | -- | -- |
| 176.07 | 0.622 | 8.03 | 0.336 | 1.16 | -- | 1.23 | -- | 0.218 | 1.12 | -- | -- | -- | -- |
| 182.29 | 0.632 | 8.04 | 0.293 | 1.16 | -- | -- | -- | 0.212 | 0.978 | -- | -- | -- | -- |
| 206.86 | 0.673 | 7.95 | 0.711 | -- | 1.7 | -- | -- | 0.548 | -- | 30 | 2 | -- | -- |
| 177.81 | 0.624 | 8.02 | -- | 0.953 | 0.699 | -- | -- | 0.282 | 0.702 | 31.5 | 14 | -- | -- |
| 265.82 | 0.762 | 8.02 | 0.337 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 184.56 | 0.635 | 8.04 | -- | 1.16 | -- | -- | -- | 0.18 | 0.989 | -- | -- | -- | -- |
| 219.4 | 0.692 | 7.97 | -- | -- | 1.51 | -- | -- | 0.439 | -- | 30 | 2 | -- | -- |
| 268.81 | 0.765 | 8.03 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.84 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 4 | 153.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 9 | 154.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 26 | 154.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 37 | 155.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 41 | 155.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 51 | 155.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 58 | 155.68 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 73 | 156.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 76 | 156.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 23 |
| 88 | 156.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 94 | 156.57 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 98 | 156.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 103 | 156.66 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 109 | 156.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 112 | 156.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 115 | 156.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 116 | 156.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 123 | 156.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 126 | 157.01 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 18 |
| 146 | 157.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 165 | 157.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 180 | 157.38 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 185 | 157.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 197 | 157.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 233 | 157.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 242 | 157.79 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 16 |
| 293 | 158.09 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 295 | 158.09 | radiation | 1 | 270 | < th | dose dependent | rect. | 19 | 21 |
| 319 | 158.22 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 343 | 158.30 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 19 |
| 352 | 158.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 356 | 158.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 386 | 158.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 431 | 158.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 470 | 158.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 508 | 159.03 | humidity | 80 | 270 | > th | dose independent | rect. | 9 | 5 |
| 546 | 159.20 | wind | 5 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 554 | 159.23 | humidity | 50 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 570 | 159.30 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 634 | 159.50 | radiation | 1 | 270 | < th | dose independent | rect. | 19 | 21 |
| 645 | 159.53 | temperature | 15 | 270 | > th | dose independent | rect. | 4 | 15 |
| 651 | 159.55 | humidity | 70 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 656 | 159.58 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 683 | 159.68 | humidity | 80 | 270 | > th | dose independent | rect. | 8 | 7 |
| 726 | 159.79 | radiation | 10 | 270 | < th | dose dependent | rect. | 9 | 5 |
| 760 | 159.89 | humidity | 60 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 777 | 159.94 | wind | 5 | 720 | > th | dose dependent | sin | 7 | NA |
| 785 | 159.98 | wind | 7 | 720 | < th | dose independent | sin | 7 | NA |
| 813 | 160.03 | wind | 7 | 720 | > th | dose independent | sin | 9 | NA |
| 822 | 160.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 862 | 160.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 864 | 160.16 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 22 |