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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0106900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant disease resistance response protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.82 (0.032) R2 : 0.444
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.46 (0.0807) R2dE : 0.419 R2E : 0.437
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.137 (0.0686) R2dN8 : 0.00659 R2N8 : 0.0248
σ : 0.599
deviance : 165.2
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 17.14
memory length : 683
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.5
open length of G : 0.533

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.82 0.59 3.84 -0.51 0.401 1.3 1.27 -0.938 0.057 11.6 20.88 703 6.13 0.871
158.51 0.586 3.83 -0.348 0.399 1.29 1.14 -- 0.0951 11.5 20.91 700 6.13 0.868
164.11 0.597 3.83 -0.346 0.361 1.28 -- -0.0423 0.091 11.2 20.4 702 6.07 0.95
163.68 0.596 3.84 -0.319 0.38 1.31 -- -- 0.0802 11.5 20.7 690 6.37 0.633
162.54 0.594 3.79 -0.237 -- 1.39 -- 0.687 0.188 -- 17.14 704 5.98 1.02
208.9 0.678 3.75 -0.195 1.04 -- 1.3 -- 0.392 12.3 -- -- -- --
216.24 0.689 3.75 -0.145 1.03 -- -- -- 0.398 12.2 -- -- -- --
162.2 0.593 3.83 -0.335 -- 1.47 -- -- 0.101 -- 17.14 683 6.52 0.514
166.2 0.6 3.82 -- 0.402 1.32 -- -- 0.0925 11.4 20.7 689 6.37 0.65
283.16 0.786 3.77 -0.178 -- -- -- -- 0.382 -- -- -- -- --
216.79 0.689 3.74 -- 1.03 -- -- -- 0.414 12.3 -- -- -- --
165.2 0.599 3.82 -- -- 1.46 -- -- 0.137 -- 17.14 683 6.5 0.533
284 0.787 3.76 -- -- -- -- -- 0.402 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 159.26 temperature 20.0 720 > th dose dependent rect. 6 1
5 164.11 humidity 90.0 720 < th dose independent rect. 6 1
6 164.80 radiation 1.0 720 > th dose independent rect. 5 2
21 170.47 radiation 1.0 720 > th dose dependent rect. 5 2
32 170.49 temperature 25.0 720 > th dose independent rect. 6 1
36 171.22 radiation 1.0 720 < th dose dependent rect. 23 9
45 172.58 temperature 10.0 30 > th dose dependent rect. 6 12
46 172.95 radiation 1.0 720 < th dose independent rect. 23 8
58 174.28 radiation 1.0 720 < th dose dependent sin 7 NA
109 176.43 radiation 1.0 720 < th dose dependent rect. 23 17
154 178.36 wind 7.0 720 < th dose dependent rect. 6 1
157 178.49 radiation 1.0 720 < th dose independent rect. 24 16
176 179.27 temperature 30.0 10 < th dose independent rect. 9 21
193 180.04 temperature 30.0 10 < th dose independent rect. 11 19
204 180.79 atmosphere 1005.0 30 > th dose dependent rect. 6 3
205 180.82 radiation 1.0 720 < th dose independent sin 8 NA
220 180.94 radiation 1.0 720 > th dose independent sin 8 NA
223 180.98 radiation 1.0 720 > th dose independent rect. 4 11
247 181.57 wind 3.0 720 < th dose independent rect. 6 1
253 181.81 temperature 25.0 10 > th dose independent rect. 6 12
257 181.96 humidity 90.0 30 < th dose independent rect. 6 12
265 182.27 humidity 90.0 30 < th dose independent rect. 6 3
305 183.21 temperature 25.0 10 > th dose independent rect. 6 5
311 183.39 radiation 10.0 90 > th dose independent rect. 17 14
315 183.42 precipitation 0.1 720 < th dose independent rect. 21 10
316 183.42 precipitation 0.1 720 < th dose dependent rect. 21 10
322 183.64 temperature 15.0 720 > th dose independent rect. 18 1
335 184.02 temperature 25.0 10 > th dose independent rect. 6 3
344 184.16 radiation 10.0 90 < th dose dependent rect. 7 23
360 184.46 temperature 30.0 30 < th dose independent rect. 7 23
366 184.56 temperature 15.0 30 > th dose independent rect. 18 12
367 184.56 radiation 1.0 720 < th dose dependent rect. 5 1
385 184.87 radiation 10.0 30 > th dose independent rect. 17 16
400 185.03 radiation 10.0 90 < th dose dependent rect. 10 22
416 185.11 temperature 30.0 10 < th dose independent rect. 15 15
442 185.29 radiation 10.0 90 < th dose dependent rect. 17 23
481 185.55 radiation 1.0 30 > th dose independent rect. 6 13
494 185.59 radiation 10.0 90 < th dose dependent rect. 15 22
496 185.62 temperature 10.0 720 > th dose dependent rect. 18 1
502 185.69 temperature 30.0 10 < th dose independent rect. 18 12
503 185.69 radiation 20.0 90 < th dose dependent sin 11 NA
507 185.71 radiation 10.0 90 < th dose dependent rect. 13 23
534 185.91 humidity 90.0 720 < th dose dependent rect. 6 1
546 186.10 radiation 20.0 720 < th dose independent rect. 6 1
547 186.11 temperature 30.0 10 < th dose independent rect. 11 10
548 186.11 humidity 60.0 10 > th dose independent rect. 18 12
556 186.16 radiation 10.0 720 < th dose dependent rect. 18 1
558 186.20 radiation 10.0 30 > th dose independent sin 11 NA
559 186.20 radiation 40.0 270 > th dose dependent rect. 14 20
563 186.23 temperature 10.0 30 > th dose dependent rect. 18 12
569 186.30 temperature 30.0 720 < th dose dependent rect. 1 9
572 186.31 radiation 10.0 90 < th dose dependent rect. 17 20
574 186.33 wind 7.0 720 < th dose independent rect. 21 10
575 186.33 radiation 40.0 270 > th dose dependent sin 12 NA
578 186.34 temperature 15.0 720 > th dose independent rect. 7 14
581 186.36 temperature 15.0 720 > th dose independent rect. 9 10
582 186.36 temperature 15.0 10 > th dose dependent rect. 6 18
586 186.38 precipitation 0.1 720 < th dose independent rect. 6 1
587 186.38 precipitation 0.1 720 < th dose dependent rect. 6 1
590 186.42 atmosphere 1015.0 720 < th dose dependent rect. 6 1
593 186.44 radiation 10.0 90 < th dose dependent no NA NA
599 186.46 radiation 10.0 90 < th dose dependent rect. 15 17
601 186.48 wind 9.0 720 < th dose independent rect. 18 1
604 186.52 radiation 10.0 720 < th dose independent rect. 18 1
609 186.54 humidity 50.0 720 > th dose independent rect. 18 1
610 186.54 atmosphere 1015.0 720 < th dose independent rect. 18 1
614 186.54 temperature 10.0 720 > th dose independent rect. 19 23
624 186.59 temperature 10.0 720 > th dose independent rect. 6 1
625 186.59 temperature 30.0 720 < th dose independent rect. 6 1
626 186.59 humidity 50.0 720 > th dose independent rect. 6 1
628 186.59 atmosphere 995.0 720 > th dose independent rect. 6 1
629 186.59 atmosphere 1015.0 720 < th dose independent rect. 6 1
633 186.59 temperature 10.0 720 > th dose independent rect. 7 23
641 186.63 radiation 10.0 90 < th dose dependent rect. 13 19
649 186.66 temperature 20.0 30 > th dose dependent rect. 6 3
675 186.84 radiation 10.0 90 < th dose dependent rect. 17 15
676 186.85 wind 9.0 30 < th dose independent rect. 6 12
703 186.96 radiation 30.0 30 < th dose dependent rect. 18 12
708 187.00 temperature 25.0 720 < th dose dependent rect. 3 4
735 187.10 atmosphere 995.0 30 > th dose dependent rect. 9 21
745 187.18 wind 7.0 4320 > th dose dependent rect. 14 2
750 187.23 precipitation 0.1 30 < th dose independent rect. 6 12
751 187.23 atmosphere 995.0 720 > th dose dependent rect. 9 3
753 187.23 precipitation 0.1 30 < th dose dependent rect. 6 12
762 187.26 temperature 25.0 720 < th dose dependent rect. 5 2
769 187.30 temperature 10.0 1440 > th dose independent rect. 7 12
772 187.30 temperature 10.0 1440 > th dose independent rect. 19 12
775 187.30 temperature 30.0 1440 < th dose independent rect. 19 12
779 187.30 humidity 50.0 1440 > th dose independent rect. 19 12
781 187.30 atmosphere 995.0 1440 > th dose independent rect. 19 12
782 187.30 radiation 40.0 1440 < th dose independent rect. 19 12
793 187.35 temperature 30.0 270 < th dose independent rect. 9 10
795 187.37 atmosphere 995.0 30 > th dose independent rect. 18 12
802 187.39 radiation 1.0 90 < th dose independent rect. 17 14
808 187.42 temperature 30.0 10 < th dose independent rect. 11 12
810 187.43 temperature 10.0 30 > th dose independent rect. 6 12
814 187.43 atmosphere 1015.0 30 < th dose independent rect. 6 12
815 187.43 radiation 20.0 30 < th dose independent rect. 18 12
833 187.48 wind 9.0 30 < th dose independent rect. 18 12
835 187.49 radiation 30.0 30 < th dose dependent rect. 11 19
836 187.50 radiation 1.0 90 < th dose independent rect. 17 17
843 187.54 radiation 10.0 90 > th dose dependent rect. 17 14
845 187.55 precipitation 0.1 720 < th dose independent rect. 18 1
846 187.55 precipitation 0.1 720 < th dose dependent rect. 18 1
867 187.63 radiation 10.0 90 < th dose dependent rect. 15 15
891 187.72 temperature 30.0 90 < th dose independent rect. 9 12
897 187.75 temperature 25.0 10 > th dose independent rect. 6 9
913 187.81 radiation 1.0 720 < th dose independent rect. 18 14
929 187.84 radiation 1.0 90 > th dose dependent sin 12 NA
951 187.92 wind 1.0 720 > th dose independent rect. 18 1
959 187.95 atmosphere 995.0 270 > th dose dependent rect. 8 11
967 187.97 radiation 10.0 30 > th dose independent rect. 6 3
987 188.01 atmosphere 1005.0 30 > th dose independent rect. 6 3
988 188.01 atmosphere 1005.0 30 > th dose independent rect. 9 21
996 188.04 temperature 25.0 10 > th dose dependent sin 2 NA