Os07g0107500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os07g0107500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 219.02 | 0.695 | 4.74 | 0.923 | 0.661 | 1.55 | 1.14 | 0.0717 | -0.27 | 10.1 | 22.2 | 1946 | -- | -- |
| 219.03 | 0.689 | 4.74 | 0.948 | 0.659 | 1.55 | 1.14 | -- | -0.264 | 10.1 | 22.21 | 1953 | -- | -- |
| 223.72 | 0.697 | 4.74 | 0.923 | 0.64 | 1.56 | -- | 0.215 | -0.274 | 10.5 | 22.21 | 2001 | -- | -- |
| 223.82 | 0.697 | 4.74 | 0.999 | 0.639 | 1.55 | -- | -- | -0.257 | 10.5 | 22.22 | 2001 | -- | -- |
| 233.27 | 0.711 | 4.78 | 0.706 | -- | 1.62 | -- | 0.683 | -0.344 | -- | 21.91 | 803 | -- | -- |
| 307.89 | 0.823 | 4.86 | 0.33 | 0.739 | -- | 1.11 | -- | -0.804 | 10.1 | -- | -- | -- | -- |
| 312.52 | 0.828 | 4.86 | 0.377 | 0.731 | -- | -- | -- | -0.8 | 10.5 | -- | -- | -- | -- |
| 234.73 | 0.714 | 4.76 | 0.912 | -- | 1.6 | -- | -- | -0.296 | -- | 22 | 796 | -- | -- |
| 246.56 | 0.731 | 4.78 | -- | 0.656 | 1.32 | -- | -- | -0.435 | 10.5 | 22.4 | 1937 | -- | -- |
| 345.34 | 0.868 | 4.87 | 0.364 | -- | -- | -- | -- | -0.803 | -- | -- | -- | -- | -- |
| 316.27 | 0.832 | 4.87 | -- | 0.729 | -- | -- | -- | -0.842 | 10.5 | -- | -- | -- | -- |
| 252.98 | 0.741 | 4.79 | -- | -- | 1.39 | -- | -- | -0.426 | -- | 22.2 | 801 | -- | -- |
| 348.83 | 0.872 | 4.88 | -- | -- | -- | -- | -- | -0.843 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 3 | 213.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 5 | 213.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 14 | 215.57 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 24 | 216.63 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 27 | 216.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 28 | 216.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 42 | 217.74 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 57 | 218.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 208 | 224.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 220 | 225.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 221 | 225.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 228 | 225.35 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 231 | 225.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 236 | 225.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 240 | 225.55 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 246 | 225.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 248 | 225.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 344 | 226.76 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 349 | 226.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 387 | 227.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 797 | 231.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 922 | 232.72 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |