Os11g0215100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os11g0215100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.9 | 0.637 | 10.2 | -6.69 | 2.3 | 3.11 | 1.5 | -9.59 | -1.08 | 10.6 | 24.69 | 1342 | -- | -- |
| 209.56 | 0.674 | 10.1 | -5.04 | 2.27 | 3.28 | 1.61 | -- | -1.02 | 10.4 | 14.04 | 8059 | -- | -- |
| 184.73 | 0.633 | 10.2 | -6.49 | 2.65 | 3.22 | -- | -9.2 | -1.26 | 10.6 | 22.65 | 1074 | -- | -- |
| 221.49 | 0.693 | 10.1 | -5.03 | 2.24 | 3.42 | -- | -- | -1.06 | 10.4 | 11.49 | 7994 | -- | -- |
| 478.73 | 1.02 | 10.1 | -4.45 | -- | 2.96 | -- | -4.05 | -0.697 | -- | 22.34 | 1543 | -- | -- |
| 395.94 | 0.933 | 9.85 | -3.35 | 2.1 | -- | 1.67 | -- | -0.103 | 10.2 | -- | -- | -- | -- |
| 407.04 | 0.945 | 9.85 | -3.28 | 2.09 | -- | -- | -- | -0.0984 | 10.3 | -- | -- | -- | -- |
| 443.39 | 0.985 | 10 | -4.04 | -- | 3.99 | -- | -- | -0.636 | -- | 3.132 | 4535 | -- | -- |
| 628.97 | 1.17 | 9.77 | -- | 2.31 | 1.35 | -- | -- | 0.268 | 10.4 | 26.6 | 2268 | -- | -- |
| 673.7 | 1.21 | 9.91 | -3.31 | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
| 691.06 | 1.23 | 9.77 | -- | 2.11 | -- | -- | -- | 0.267 | 10.4 | -- | -- | -- | -- |
| 849.62 | 1.36 | 9.89 | -- | -- | 2.73 | -- | -- | -0.0443 | -- | 3.132 | 4535 | -- | -- |
| 963.5 | 1.45 | 9.83 | -- | -- | -- | -- | -- | 0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 25 | 181.61 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 44 | 182.30 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 57 | 183.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 81 | 183.73 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 115 | 185.30 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 142 | 185.71 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 168 | 186.15 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 170 | 186.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 14 |
| 236 | 187.05 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 256 | 187.73 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 295 | 188.54 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 300 | 188.60 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 309 | 188.85 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 311 | 188.88 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 317 | 189.00 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 321 | 189.02 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 322 | 189.03 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 333 | 189.17 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 336 | 189.20 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 340 | 189.22 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 348 | 189.35 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 373 | 189.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 376 | 189.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 382 | 189.76 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 385 | 189.82 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 390 | 189.88 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 394 | 189.89 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 401 | 189.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 402 | 189.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 423 | 190.24 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 474 | 190.57 | wind | 5 | 43200 | < th | dose independent | sin | 1 | NA |
| 526 | 191.03 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 529 | 191.07 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 557 | 191.25 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 590 | 191.47 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 597 | 191.53 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 649 | 191.83 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 676 | 192.00 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 696 | 192.10 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 737 | 192.38 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 776 | 192.61 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 786 | 192.68 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 792 | 192.70 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 795 | 192.72 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 799 | 192.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 820 | 192.91 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 942 | 193.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |