Os11g0179000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os11g0179000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 395.06 | 0.934 | 5.73 | 1.05 | 0.775 | -2.46 | 0.386 | -4.17 | 1.58 | 3.53 | 18.9 | 11 | 20.6 | -- |
| 405.4 | 0.938 | 5.7 | 1.43 | 0.948 | -2.16 | 1.82 | -- | 1.68 | 1.25 | 21.86 | 14 | 20.7 | -- |
| 395.23 | 0.926 | 5.74 | 1.04 | 0.667 | -2.49 | -- | -4.42 | 1.58 | 3.27 | 18.9 | 10 | 20.2 | -- |
| 418.39 | 0.953 | 5.69 | 1.41 | 0.809 | -2.44 | -- | -- | 1.7 | 2 | 21.27 | 14 | 20.6 | -- |
| 401.52 | 0.933 | 5.73 | 1.16 | -- | -2.97 | -- | -4.36 | 1.6 | -- | 17.83 | 31 | 19.2 | -- |
| 460.69 | 1.01 | 5.77 | 1.15 | 1.91 | -- | 2.35 | -- | 1.44 | 0.362 | -- | -- | -- | -- |
| 484.55 | 1.03 | 5.78 | 1.06 | 1.91 | -- | -- | -- | 1.42 | 0.378 | -- | -- | -- | -- |
| 425.39 | 0.961 | 5.7 | 1.53 | -- | -3.03 | -- | -- | 1.67 | -- | 17.92 | 89 | 19.7 | -- |
| 467.22 | 1.01 | 5.76 | -- | 1.17 | -1.88 | -- | -- | 1.47 | 0.695 | 23.57 | 14 | 20.7 | -- |
| 712.73 | 1.25 | 5.74 | 1.13 | -- | -- | -- | -- | 1.45 | -- | -- | -- | -- | -- |
| 514.27 | 1.06 | 5.81 | -- | 1.92 | -- | -- | -- | 1.31 | 0.406 | -- | -- | -- | -- |
| 483.53 | 1.02 | 5.76 | -- | -- | -2.63 | -- | -- | 1.46 | -- | 12.45 | 138 | 19.7 | -- |
| 746.2 | 1.28 | 5.77 | -- | -- | -- | -- | -- | 1.33 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 395.85 | temperature | 20 | 10 | > th | dose dependent | sin | 3 | NA |
| 4 | 396.87 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 10 | 397.72 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 30 | 399.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 77 | 403.84 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 82 | 404.46 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 90 | 405.03 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 92 | 405.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 99 | 405.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 101 | 405.79 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 103 | 405.97 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 107 | 406.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 112 | 406.33 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 114 | 406.41 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 115 | 406.41 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 117 | 406.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 119 | 406.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 121 | 406.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 129 | 406.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 130 | 406.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 135 | 406.75 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 171 | 407.22 | temperature | 20 | 14400 | > th | dose independent | sin | 16 | NA |
| 224 | 407.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 244 | 408.04 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 291 | 408.55 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 292 | 408.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 12 |
| 303 | 408.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 360 | 409.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 382 | 409.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 13 |
| 400 | 409.29 | temperature | 20 | 14400 | < th | dose independent | sin | 16 | NA |
| 423 | 409.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 464 | 409.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 523 | 409.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 563 | 410.06 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 626 | 410.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 640 | 410.36 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 668 | 410.46 | temperature | 30 | 1440 | < th | dose dependent | sin | 21 | NA |
| 697 | 410.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 711 | 410.61 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 780 | 410.84 | temperature | 25 | 14400 | < th | dose dependent | rect. | 10 | 13 |
| 824 | 410.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 899 | 411.15 | wind | 5 | 14400 | > th | dose independent | sin | 9 | NA |
| 995 | 411.42 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 999 | 411.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 22 |