Os07g0107100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os07g0107100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.94 | 0.589 | 6.85 | -1.4 | 1.69 | -1.32 | -0.469 | 3.38 | -1.03 | 1.75 | 94.03 | 200 | -- | -- |
| 163.02 | 0.595 | 6.87 | -1.39 | 1.65 | -1.63 | -0.267 | -- | -1 | 1.62 | 94.64 | 195 | -- | -- |
| 157.73 | 0.585 | 6.85 | -1.39 | 1.69 | -1.4 | -- | 3.22 | -1.03 | 1.78 | 94.18 | 199 | -- | -- |
| 162.9 | 0.594 | 6.86 | -1.38 | 1.69 | -1.77 | -- | -- | -1.02 | 1.73 | 94.65 | 199 | -- | -- |
| 285.06 | 0.786 | 6.78 | -1.37 | -- | -1.76 | -- | 1.08 | -1.26 | -- | 87.7 | 1025 | -- | -- |
| 176 | 0.622 | 6.85 | -1.42 | 1.57 | -- | -0.317 | -- | -0.938 | 1.32 | -- | -- | -- | -- |
| 176.41 | 0.622 | 6.85 | -1.41 | 1.57 | -- | -- | -- | -0.937 | 1.34 | -- | -- | -- | -- |
| 264.67 | 0.758 | 6.87 | -1.26 | -- | -1.79 | -- | -- | -1.09 | -- | 76.36 | 1009 | -- | -- |
| 212.62 | 0.679 | 6.84 | -- | 1.72 | -1.39 | -- | -- | -0.91 | 1.96 | 93.51 | 261 | -- | -- |
| 328.14 | 0.846 | 6.83 | -1.35 | -- | -- | -- | -- | -0.904 | -- | -- | -- | -- | -- |
| 228.99 | 0.708 | 6.81 | -- | 1.54 | -- | -- | -- | -0.78 | 1.31 | -- | -- | -- | -- |
| 301.88 | 0.809 | 6.85 | -- | -- | -1.89 | -- | -- | -1.03 | -- | 83 | 997 | -- | -- |
| 376.29 | 0.905 | 6.79 | -- | -- | -- | -- | -- | -0.754 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 8 | 152.60 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 23 | 7 |
| 9 | 152.63 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 23 | 2 |
| 10 | 152.64 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 24 | 154.31 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 25 | 154.35 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 5 |
| 51 | 155.49 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 56 | 155.63 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 5 |
| 58 | 155.79 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 62 | 155.98 | wind | 1.0 | 90 | < th | dose independent | rect. | 24 | 1 |
| 64 | 155.99 | wind | 1.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 100 | 156.89 | radiation | 40.0 | 270 | < th | dose independent | rect. | 5 | 16 |
| 111 | 157.24 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 24 | 7 |
| 128 | 157.42 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 154 | 157.84 | humidity | 90.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 165 | 157.97 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 192 | 158.25 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 236 | 158.70 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 249 | 158.84 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 251 | 158.84 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 3 |
| 252 | 158.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 262 | 158.89 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 340 | 159.65 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 20 | 9 |
| 357 | 159.76 | radiation | 30.0 | 270 | < th | dose independent | sin | 22 | NA |
| 380 | 159.89 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 11 |
| 389 | 159.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 394 | 159.97 | radiation | 40.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 418 | 160.07 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 419 | 160.07 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 9 | 1 |
| 429 | 160.11 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 432 | 160.13 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 455 | 160.23 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 9 |
| 493 | 160.39 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 579 | 160.73 | atmosphere | 1010.0 | 10 | < th | dose dependent | sin | 8 | NA |
| 583 | 160.74 | humidity | 90.0 | 90 | > th | dose independent | rect. | 23 | 7 |
| 615 | 160.82 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 660 | 160.96 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 19 |
| 665 | 160.97 | radiation | 40.0 | 720 | < th | dose independent | rect. | 6 | 7 |
| 692 | 161.08 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 709 | 161.13 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 22 | 8 |
| 719 | 161.16 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 750 | 161.25 | radiation | 1.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 775 | 161.36 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 776 | 161.36 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 777 | 161.37 | humidity | 90.0 | 30 | > th | dose dependent | sin | 8 | NA |
| 785 | 161.38 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 19 |
| 786 | 161.39 | temperature | 15.0 | 90 | > th | dose independent | rect. | 23 | 18 |
| 850 | 161.53 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 866 | 161.58 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 920 | 161.69 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 949 | 161.77 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 12 |
| 960 | 161.79 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 981 | 161.86 | humidity | 90.0 | 720 | < th | dose independent | rect. | 22 | 2 |