Os03g0809000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os03g0809000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 278.33 | 0.784 | 3 | 0.275 | 0.188 | 4.24 | 0.723 | 8.31 | 0.233 | 10 | 9.004 | 319 | -- | -- |
| 284.59 | 0.786 | 2.96 | 0.235 | 0.264 | 3.37 | 1.03 | -- | 0.348 | 9.58 | 9.499 | 333 | -- | -- |
| 280.34 | 0.78 | 3.01 | 0.315 | 0.185 | 4.54 | -- | 9.37 | 0.239 | 10.1 | 9.069 | 319 | -- | -- |
| 284.17 | 0.785 | 2.94 | 0.289 | 0.288 | 2.79 | -- | -- | 0.328 | 9.38 | 9.4 | 376 | -- | -- |
| 282.38 | 0.783 | 3.01 | 0.311 | -- | 4.51 | -- | 9.43 | 0.234 | -- | 9.008 | 318 | -- | -- |
| 300.23 | 0.812 | 2.98 | 0.008 | 0.159 | -- | 0.949 | -- | 0.174 | 9.92 | -- | -- | -- | -- |
| 303.22 | 0.815 | 2.98 | 0.0485 | 0.176 | -- | -- | -- | 0.179 | 12.1 | -- | -- | -- | -- |
| 285.4 | 0.787 | 2.97 | 0.173 | -- | 2.56 | -- | -- | 0.261 | -- | 9.4 | 376 | -- | -- |
| 284.24 | 0.785 | 2.96 | -- | 0.198 | 2.42 | -- | -- | 0.237 | 11 | 9.406 | 376 | -- | -- |
| 305.16 | 0.816 | 2.98 | 0.0429 | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
| 303.28 | 0.815 | 2.98 | -- | 0.175 | -- | -- | -- | 0.173 | 12.1 | -- | -- | -- | -- |
| 286.42 | 0.788 | 2.98 | -- | -- | 2.39 | -- | -- | 0.218 | -- | 9.497 | 376 | -- | -- |
| 305.21 | 0.815 | 2.99 | -- | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 269.11 | wind | 9 | 10 | > th | dose dependent | rect. | 18 | 2 |
| 10 | 270.80 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 2 |
| 72 | 276.82 | wind | 7 | 30 | < th | dose independent | sin | 14 | NA |
| 73 | 276.93 | wind | 7 | 30 | > th | dose independent | sin | 13 | NA |
| 92 | 279.78 | wind | 9 | 270 | > th | dose independent | sin | 18 | NA |
| 102 | 279.97 | wind | 9 | 270 | > th | dose independent | rect. | 12 | 9 |
| 106 | 280.07 | wind | 9 | 270 | > th | dose independent | rect. | 12 | 23 |
| 107 | 280.08 | wind | 9 | 270 | < th | dose independent | sin | 18 | NA |
| 110 | 280.12 | wind | 9 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 113 | 280.17 | wind | 9 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 130 | 280.29 | wind | 9 | 270 | > th | dose dependent | sin | 18 | NA |
| 164 | 280.57 | wind | 7 | 30 | > th | dose independent | rect. | 12 | 10 |
| 217 | 281.02 | wind | 9 | 270 | > th | dose independent | rect. | 15 | 22 |
| 230 | 281.11 | wind | 9 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 387 | 281.65 | wind | 9 | 270 | > th | dose independent | no | NA | NA |
| 428 | 281.65 | wind | 9 | 720 | > th | dose dependent | rect. | 10 | 6 |
| 485 | 281.78 | wind | 9 | 270 | > th | dose dependent | rect. | 15 | 6 |
| 551 | 281.88 | wind | 9 | 270 | > th | dose dependent | no | NA | NA |
| 605 | 281.92 | wind | 9 | 270 | < th | dose independent | no | NA | NA |
| 767 | 282.55 | wind | 5 | 30 | > th | dose dependent | sin | 14 | NA |
| 827 | 282.90 | wind | 9 | 720 | > th | dose independent | sin | 4 | NA |
| 830 | 282.92 | wind | 9 | 720 | > th | dose dependent | sin | 3 | NA |