Os12g0174700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os12g0174700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.58 | 0.628 | 8.17 | 0.729 | 1.6 | -2.41 | 0.574 | -2.2 | 0.262 | 10.2 | 9.966 | 267 | -- | -- |
| 181.87 | 0.628 | 8.13 | 1.06 | 1.57 | -2.44 | 0.507 | -- | 0.351 | 10.2 | 9.796 | 292 | -- | -- |
| 179.59 | 0.624 | 8.17 | 0.756 | 1.53 | -2.41 | -- | -2.16 | 0.267 | 10.2 | 8.091 | 311 | -- | -- |
| 182.84 | 0.63 | 8.12 | 1.09 | 1.54 | -2.46 | -- | -- | 0.358 | 10.2 | 7.72 | 308 | -- | -- |
| 254.67 | 0.743 | 8.23 | 0.711 | -- | -2.25 | -- | -2.19 | 0.151 | -- | 24.11 | 660 | -- | -- |
| 243.91 | 0.732 | 8.19 | 0.528 | 1.83 | -- | 1.01 | -- | 0.00463 | 8.66 | -- | -- | -- | -- |
| 247.24 | 0.736 | 8.19 | 0.562 | 1.83 | -- | -- | -- | 0.00536 | 8.71 | -- | -- | -- | -- |
| 250.71 | 0.737 | 8.18 | 1.11 | -- | -2.56 | -- | -- | 0.287 | -- | 24.17 | 683 | -- | -- |
| 211.01 | 0.677 | 8.16 | -- | 1.59 | -1.94 | -- | -- | 0.174 | 9.79 | 6.662 | 300 | -- | -- |
| 436.36 | 0.976 | 8.24 | 0.565 | -- | -- | -- | -- | 0.0204 | -- | -- | -- | -- | -- |
| 255.55 | 0.748 | 8.21 | -- | 1.83 | -- | -- | -- | -0.0572 | 8.68 | -- | -- | -- | -- |
| 281.73 | 0.782 | 8.22 | -- | -- | -2.35 | -- | -- | 0.131 | -- | 24.35 | 665 | -- | -- |
| 444.78 | 0.984 | 8.26 | -- | -- | -- | -- | -- | -0.0423 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.61 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 43 | 178.50 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 46 | 178.59 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 69 | 181.05 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 73 | 181.23 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 88 | 181.71 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 91 | 181.84 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 95 | 181.98 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 7 | 13 |
| 125 | 182.74 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 142 | 182.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 143 | 182.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 152 | 183.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 156 | 183.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 212 | 183.83 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 218 | 183.86 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 274 | 184.41 | temperature | 15.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 297 | 184.55 | temperature | 30.0 | 720 | > th | dose independent | rect. | 16 | 22 |
| 305 | 184.62 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 322 | 184.87 | temperature | 30.0 | 720 | < th | dose independent | rect. | 10 | 22 |
| 325 | 184.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 355 | 185.36 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 367 | 185.48 | temperature | 30.0 | 720 | < th | dose independent | rect. | 10 | 15 |
| 371 | 185.53 | temperature | 30.0 | 720 | < th | dose independent | rect. | 20 | 21 |
| 387 | 185.68 | temperature | 30.0 | 720 | < th | dose independent | rect. | 4 | 13 |
| 408 | 185.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 409 | 185.86 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 3 |
| 417 | 185.93 | temperature | 30.0 | 720 | < th | dose independent | rect. | 10 | 13 |
| 421 | 185.98 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 6 |
| 423 | 185.99 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 437 | 186.07 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 443 | 186.09 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 452 | 186.17 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 18 |
| 453 | 186.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 514 | 186.34 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 20 |
| 519 | 186.36 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 581 | 186.74 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 582 | 186.74 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 4 |
| 594 | 186.79 | temperature | 30.0 | 720 | > th | dose independent | rect. | 9 | 10 |
| 614 | 186.80 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 643 | 186.97 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 647 | 187.00 | temperature | 30.0 | 720 | > th | dose independent | no | NA | NA |
| 747 | 187.07 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 748 | 187.09 | temperature | 30.0 | 720 | < th | dose independent | sin | 20 | NA |
| 759 | 187.14 | temperature | 30.0 | 720 | > th | dose independent | sin | 22 | NA |
| 839 | 187.36 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 855 | 187.43 | temperature | 30.0 | 720 | < th | dose independent | no | NA | NA |
| 916 | 187.56 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 924 | 187.57 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 926 | 187.59 | temperature | 30.0 | 720 | > th | dose dependent | no | NA | NA |
| 927 | 187.59 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 8 | 11 |