Os10g0398100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os10g0398100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.51 | 0.295 | 3.3 | -0.0393 | 0.162 | 0.364 | -0.156 | 0.801 | -0.166 | 9.93 | 89 | 5744 | -- | -- |
| 40.36 | 0.296 | 3.3 | -0.0917 | 0.168 | 0.405 | -0.147 | -- | -0.175 | 9.45 | 87 | 6038 | -- | -- |
| 39.6 | 0.293 | 3.3 | -0.0444 | 0.166 | 0.362 | -- | 0.802 | -0.167 | 9.67 | 89 | 5710 | -- | -- |
| 40.39 | 0.296 | 3.29 | -0.0961 | 0.172 | 0.424 | -- | -- | -0.179 | 8.85 | 87 | 6066 | -- | -- |
| 41.15 | 0.299 | 3.3 | -0.0493 | -- | 0.386 | -- | 0.748 | -0.17 | -- | 89 | 5842 | -- | -- |
| 42.56 | 0.306 | 3.28 | -0.112 | 0.159 | -- | -0.172 | -- | -0.106 | 9.75 | -- | -- | -- | -- |
| 42.66 | 0.306 | 3.28 | -0.12 | 0.162 | -- | -- | -- | -0.107 | 9.35 | -- | -- | -- | -- |
| 41.92 | 0.302 | 3.3 | -0.0969 | -- | 0.412 | -- | -- | -0.175 | -- | 87 | 5897 | -- | -- |
| 40.62 | 0.297 | 3.29 | -- | 0.179 | 0.426 | -- | -- | -0.175 | 8.84 | 88 | 6086 | -- | -- |
| 44.2 | 0.311 | 3.28 | -0.12 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 43.03 | 0.307 | 3.28 | -- | 0.162 | -- | -- | -- | -0.0933 | 9.4 | -- | -- | -- | -- |
| 42.16 | 0.302 | 3.3 | -- | -- | 0.427 | -- | -- | -0.175 | -- | 88 | 5900 | -- | -- |
| 44.58 | 0.312 | 3.28 | -- | -- | -- | -- | -- | -0.0926 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.55 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 3 | 38.58 | humidity | 90 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 4 | 38.60 | humidity | 80 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 5 | 38.61 | humidity | 80 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 18 | 38.75 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 19 | 38.76 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 36 | 38.81 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 11 |
| 42 | 38.83 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 62 | 38.93 | humidity | 70 | 14400 | > th | dose independent | rect. | 22 | 12 |
| 64 | 38.93 | humidity | 70 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 68 | 38.95 | humidity | 50 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 92 | 39.04 | humidity | 70 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 95 | 39.05 | humidity | 60 | 4320 | > th | dose dependent | rect. | 5 | 4 |
| 120 | 39.11 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 127 | 39.11 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 135 | 39.14 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 137 | 39.15 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 3 | 23 |
| 155 | 39.19 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 168 | 39.22 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 171 | 39.23 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 172 | 39.23 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 195 | 39.25 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 209 | 39.28 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 221 | 39.31 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 254 | 39.35 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 277 | 39.37 | humidity | 90 | 4320 | < th | dose dependent | sin | 5 | NA |
| 312 | 39.40 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |
| 362 | 39.44 | humidity | 70 | 4320 | > th | dose independent | sin | 5 | NA |
| 406 | 39.46 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 407 | 39.46 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 21 |
| 408 | 39.46 | humidity | 50 | 4320 | > th | dose dependent | sin | 5 | NA |
| 461 | 39.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 467 | 39.49 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 468 | 39.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 470 | 39.49 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 7 |
| 481 | 39.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 523 | 39.52 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 541 | 39.52 | wind | 9 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 553 | 39.53 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 569 | 39.54 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 2 |
| 570 | 39.54 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 572 | 39.54 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 7 |
| 596 | 39.55 | humidity | 70 | 4320 | < th | dose independent | sin | 5 | NA |
| 624 | 39.56 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 657 | 39.57 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 677 | 39.57 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 16 |
| 686 | 39.57 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 696 | 39.57 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 705 | 39.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 727 | 39.58 | humidity | 60 | 14400 | < th | dose dependent | rect. | 18 | 22 |
| 731 | 39.59 | humidity | 90 | 90 | < th | dose independent | rect. | 1 | 7 |
| 735 | 39.59 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 764 | 39.59 | wind | 1 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 806 | 39.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 843 | 39.61 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 884 | 39.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 921 | 39.62 | humidity | 60 | 14400 | < th | dose dependent | sin | 0 | NA |
| 924 | 39.62 | wind | 3 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 968 | 39.63 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 971 | 39.63 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 21 |