Os11g0180000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os11g0180000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 356.36 | 0.887 | 4.74 | -1.51 | 0.654 | 4.46 | -0.837 | -2.8 | -0.686 | 20.1 | 19.54 | 94 | 20.7 | -- |
| 363.44 | 0.888 | 4.7 | -1.23 | 0.647 | 4.25 | -0.33 | -- | -0.6 | 19.5 | 19.58 | 93 | 20.8 | -- |
| 358.01 | 0.881 | 4.73 | -1.44 | 0.647 | 4.41 | -- | -2.24 | -0.675 | 19.8 | 19.68 | 93 | 20.7 | -- |
| 363.25 | 0.888 | 4.71 | -1.2 | 0.674 | 4.39 | -- | -- | -0.595 | 20.5 | 19.11 | 93 | 20.5 | -- |
| 362.11 | 0.886 | 4.72 | -1.39 | -- | 4.2 | -- | -2.42 | -0.731 | -- | 20.36 | 167 | 21 | -- |
| 552.77 | 1.1 | 4.55 | -0.567 | 2.04 | -- | 0.525 | -- | -0.147 | 12.6 | -- | -- | -- | -- |
| 553.94 | 1.1 | 4.55 | -0.547 | 2.04 | -- | -- | -- | -0.144 | 12.6 | -- | -- | -- | -- |
| 368.05 | 0.894 | 4.67 | -1.17 | -- | 3.98 | -- | -- | -0.597 | -- | 19.95 | 156 | 20.7 | -- |
| 400.09 | 0.932 | 4.68 | -- | 0.557 | 4.01 | -- | -- | -0.482 | 19 | 19.48 | 92 | 20.7 | -- |
| 815.36 | 1.33 | 4.59 | -0.619 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 561.83 | 1.11 | 4.54 | -- | 2.05 | -- | -- | -- | -0.0833 | 12.6 | -- | -- | -- | -- |
| 403.42 | 0.935 | 4.64 | -- | -- | 3.8 | -- | -- | -0.407 | -- | 19.89 | 114 | 20.1 | -- |
| 825.45 | 1.34 | 4.57 | -- | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 356.99 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 4 | 358.18 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 12 | 361.81 | temperature | 10 | 30 | > th | dose dependent | sin | 2 | NA |
| 24 | 363.86 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 64 | 377.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 73 | 379.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 78 | 380.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 104 | 384.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 109 | 384.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 110 | 384.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 150 | 388.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 152 | 388.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 160 | 388.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 173 | 389.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 235 | 393.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 327 | 397.06 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 376 | 398.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 418 | 400.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 467 | 401.98 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 473 | 402.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 22 | 20 |
| 480 | 402.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 502 | 402.52 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 514 | 402.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 524 | 402.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 18 |
| 526 | 402.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 531 | 403.05 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 574 | 404.08 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 702 | 405.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 722 | 406.23 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 937 | 410.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |