BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0481400 Os08g0481400|AK106818
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0481400 Similar to HAHB-7 (Fragment) 340 4e-94
Os09g0470500 Homeodomain leucine zipper protein 221 3e-58
Os03g0188900 Similar to HAHB-7 (Fragment) 166 2e-41
Os02g0729700 Similar to HAHB-7 (Fragment) 139 2e-33
Os08g0416000 Homeodomain leucine zipper protein 136 1e-32
Os10g0404900 Similar to HAHB-5 (Fragment) 135 4e-32
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 120 8e-28
Os02g0649300 Similar to Short highly repeated, interspersed... 120 8e-28
Os09g0379600 Homeodomain-like containing protein 114 1e-25
Os04g0541700 Homeodomain-like containing protein 108 3e-24
Os03g0198600 Similar to HAHB-7 (Fragment) 87 1e-17
Os07g0581700 Similar to HAHB-7 (Fragment) 87 1e-17
Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza... 75 6e-14
Os06g0140400 Similar to HAHB-6 (Fragment) 74 8e-14
Os02g0565600 Similar to Homeodomain leucine zipper protein ... 74 1e-13
Os01g0643600 Homeobox domain containing protein 73 2e-13
AY346328 73 3e-13
Os04g0548700 Homeodomain-like containing protein 72 6e-13
Os02g0149900 72 6e-13
Os06g0140700 Similar to Homeodomain leucine zipper protein ... 70 1e-12
Os09g0447000 Homeobox domain containing protein 69 5e-12
Os06g0698200 66 3e-11
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 340 bits (873), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 184/269 (68%), Positives = 184/269 (68%)
Query: 1 MRSPAALLPXXXXXXXXXXXXXXXXXXXXXXXCXXXXXXXXEKKRRLSVEQVRALERSFE 60
MRSPAALLP C EKKRRLSVEQVRALERSFE
Sbjct: 1 MRSPAALLPVVADGGGGVGVEEEMDVDEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFE 60
Query: 61 TENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDA 120
TENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDA
Sbjct: 61 TENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDA 120
Query: 121 LRRDKDALLAEIKELKGKLGDEDAAASFSSVKXXXXXXXXXXXXXXTGAPQGSSESDSSA 180
LRRDKDALLAEIKELKGKLGDEDAAASFSSVK TGAPQGSSESDSSA
Sbjct: 121 LRRDKDALLAEIKELKGKLGDEDAAASFSSVKEEEDPAASDADPPATGAPQGSSESDSSA 180
Query: 181 VLNDAEILPHKXXXXXXXXXXXXXXXXXXXXXXXLLHHAEVFFHGQLLKVDDDEXXXXXX 240
VLNDAEILPHK LLHHAEVFFHGQLLKVDDDE
Sbjct: 181 VLNDAEILPHKPAPAAAADAAASEETEAVVTGAALLHHAEVFFHGQLLKVDDDEAAFLGD 240
Query: 241 XXXXXXXXXXXEHLPSLPWWAEPTEQWTT 269
EHLPSLPWWAEPTEQWTT
Sbjct: 241 DGAACGGFFADEHLPSLPWWAEPTEQWTT 269
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/233 (59%), Positives = 146/233 (62%), Gaps = 11/233 (4%)
Query: 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 101
EKKRRLSVEQVRALERSFE ENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE
Sbjct: 50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 109
Query: 102 RDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSVKXXXXXXXXX 161
RDYAALR SYD+LR DHDALRRDKDALLAEIKELK KLGDE+AAASF+SVK
Sbjct: 110 RDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEEAAASFTSVK-----EEPA 164
Query: 162 XXXXXTGAPQGSSESDSSAVLNDAEILPHKXXXXXXXXXXXXX------XXXXXXXXXXL 215
A GSS+SDSSAVLND +
Sbjct: 165 ASDGPPAAGFGSSDSDSSAVLNDVDAAGAAPAATDALAPEACTFLGAPPAAGAGAGAAAA 224
Query: 216 LHHAEVFFHGQLLKVDDDEXXXXXXXXXXXXXXXXXEHLPSLPWWAEPTEQWT 268
H EVFFHG LKV++DE + P WWAEPTE W
Sbjct: 225 ASHEEVFFHGNFLKVEEDETGFLDDDEPCGGFFADDQPPPLSSWWAEPTEHWN 277
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 93/98 (94%)
Query: 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 101
EKKRRL++EQVRALERSF+T+NKL+P+RKAR+ARDLGLQPRQVAVWFQNRRARWKTKQLE
Sbjct: 71 EKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
Query: 102 RDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139
RD+AALR +DALRAD DALRRDKDAL AEI+EL+ KL
Sbjct: 131 RDFAALRARHDALRADCDALRRDKDALAAEIRELREKL 168
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 79/98 (80%)
Query: 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 101
EKKRRL+ EQV LERSFE ENKLEPERK LAR LGLQPRQVAVWFQNRRARWKTKQLE
Sbjct: 76 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLE 135
Query: 102 RDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139
RD+ L+ S+DALRADHDAL +D L +++ L KL
Sbjct: 136 RDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKL 173
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 84/110 (76%)
Query: 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 101
EKKRRL+ EQV+ LERSFE ENKLEPERK LAR LG+ PRQVAVWFQNRRARWKTKQLE
Sbjct: 85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLE 144
Query: 102 RDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSV 151
D+ L+ +YDAL ADH AL D D L A++ L KL D++ + S +++
Sbjct: 145 HDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKETSPSSATI 194
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 78/94 (82%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KKRRLSVEQVR LERSFE+ NKLEPERKA+LAR LGLQPRQVA+WFQNRRARWKTKQLE+
Sbjct: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
Query: 103 DYAALRQSYDALRADHDALRRDKDALLAEIKELK 136
D+ ALR+ DA RA++DAL L AEI LK
Sbjct: 164 DFDALRRQLDAARAENDALLSLNSKLHAEIVALK 197
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 84/107 (78%), Gaps = 7/107 (6%)
Query: 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 101
++K+R S EQ+++LE F T+ KLEP +K +LAR+LGLQPRQVA+WFQN+RARWK+KQLE
Sbjct: 51 DRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLE 110
Query: 102 RDYAALRQSYDALRADHDALRRDKDALLAEIKEL-------KGKLGD 141
R+Y+ALR YDAL +++L+++K AL+ ++++L +GK GD
Sbjct: 111 REYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQEPRGKYGD 157
>Os02g0649300 Similar to Short highly repeated, interspersed DNA (Fragment)
Length = 261
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 79/101 (78%), Gaps = 1/101 (0%)
Query: 42 EKKRRLSVEQVRALERSFETEN-KLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQL 100
E+KRR + EQVR+LE +F KLEP KA LAR+LGLQPRQVA+WFQN+RARW++KQ+
Sbjct: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
Query: 101 ERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGD 141
E DYAALR YDAL A ++LR++K AL ++ EL+GKL +
Sbjct: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNE 163
>Os09g0379600 Homeodomain-like containing protein
Length = 286
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Query: 43 KKRRLSVEQVRALERSFETEN-KLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 101
+KRRL+ EQVRALERSFE E KLEPERK+ LAR LG+ PRQVAVWFQNRRARWKTKQLE
Sbjct: 48 RKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLE 107
Query: 102 RDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139
D+ LR ++D L A AL D ++L +++ L KL
Sbjct: 108 LDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEKL 145
>Os04g0541700 Homeodomain-like containing protein
Length = 262
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
Query: 42 EKKRRLSVEQVRALERSFETEN-KLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQL 100
E+KRR + EQ+R+LE F + KLEP KA LAR+LGLQPRQVA+WFQN+RARW++KQL
Sbjct: 58 ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQL 117
Query: 101 ERDYAALRQSYDALRADHDALRRDKDALLAEI 132
E DYAALR YDAL + ++L+++K AL ++
Sbjct: 118 EHDYAALRSKYDALHSRVESLKQEKLALTVQL 149
>Os03g0198600 Similar to HAHB-7 (Fragment)
Length = 239
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 68/100 (68%), Gaps = 3/100 (3%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KKRRLS EQ R LE SF+ E KLE RK +LA +LGL +QVAVWFQNRRAR K+K +E
Sbjct: 61 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEE 120
Query: 103 DYAALRQSYDALRADHDALRRDKDAL---LAEIKELKGKL 139
++A LR ++DA+ + L + L LA+++E K KL
Sbjct: 121 EFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKL 160
>Os07g0581700 Similar to HAHB-7 (Fragment)
Length = 240
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KKRRLS EQV LE SF E KLE RK LA +LGL P+QVAVWFQNRRAR K+K LE
Sbjct: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
Query: 103 DYAALRQSYDA-----LRADHDALRRDKDALLA--EIKELKGKLGDEDAAA 146
+++ L+ ++DA +++ LR + ++A E++ L+ G A+
Sbjct: 122 EFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRLRSAAGSHTASG 172
>Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK RLS +Q LE +F+ N L P++KA LAR L L+PRQV VWFQNRRAR K KQ E
Sbjct: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
Query: 103 DYAALRQSYDALRADHDALRRD 124
D L++ + L ++ L R+
Sbjct: 217 DCELLKRCCETLTDENRRLHRE 238
>Os06g0140400 Similar to HAHB-6 (Fragment)
Length = 256
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK RLS +Q LE F+T + L P++K LA+ L L+PRQV VWFQNRRAR K KQ E
Sbjct: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
Query: 103 DYAALRQSYDALRADHDALRRDKDALLAEIKELK 136
D L++ D L D+ L ++ LAE++ LK
Sbjct: 154 DCEHLKRWCDQLADDNRRLHKE----LAELRALK 183
>Os02g0565600 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 349
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK RLS EQ LE SF+ + L P++K+ LA L L+PRQV VWFQNRRAR K KQ E
Sbjct: 153 KKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEV 212
Query: 103 DYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139
D L++ + L ++ L+R E+ EL+G L
Sbjct: 213 DCEHLKRCCERLTRENRRLQR-------EVAELRGTL 242
>Os01g0643600 Homeobox domain containing protein
Length = 229
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 56/88 (63%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK RLS EQ R LE SF + L P++K LA L L+PRQV VWFQNRRAR K KQ E
Sbjct: 78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEM 137
Query: 103 DYAALRQSYDALRADHDALRRDKDALLA 130
+ L++ + +L ++ L+R+ + L A
Sbjct: 138 ECEYLKRCFGSLTEENRRLQREVEELRA 165
>AY346328
Length = 292
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 7/97 (7%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK RLS EQ LE SF+ + L P++K+ LA L L+PRQV VWFQNRRAR K KQ E
Sbjct: 96 KKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEV 155
Query: 103 DYAALRQSYDALRADHDALRRDKDALLAEIKELKGKL 139
D L++ + L ++ L+R E+ EL+G L
Sbjct: 156 DCEHLKRCCERLTRENRRLQR-------EVAELRGAL 185
>Os04g0548700 Homeodomain-like containing protein
Length = 247
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK RLS +Q LE SF L P +KA LA+ LGL+PRQV VWFQNRRAR K KQ E
Sbjct: 82 KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEV 141
Query: 103 DYAALRQSYDALRADHDALRRDKDALLA 130
D L++ + L ++ L+++ L A
Sbjct: 142 DCEFLKRCCETLTEENRRLQKEVQELRA 169
>Os02g0149900
Length = 248
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 48/82 (58%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK RL+ EQ LE SF N L K LA LGL RQV VWFQNRRAR K KQ E
Sbjct: 117 KKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEA 176
Query: 103 DYAALRQSYDALRADHDALRRD 124
D LR+ D L AD+ LRRD
Sbjct: 177 DCDLLRRWCDHLAADNARLRRD 198
>Os06g0140700 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 308
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK RLS +Q LE F+T + L P++K LA LGL+PRQV VWFQNRRAR K KQ E
Sbjct: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
Query: 103 DYAALRQSYDALRADHDALRRDKDALLAEIKELK 136
D L++ + L ++ L ++ LA+++ LK
Sbjct: 175 DCEYLKRWCERLADENKRLEKE----LADLRALK 204
>Os09g0447000 Homeobox domain containing protein
Length = 90
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 47 LSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAA 106
LS EQ LE SF+ + L P++K LA+ L L+PRQV VWFQNRRAR K KQ E D
Sbjct: 1 LSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEY 60
Query: 107 LRQSYDALRADHDALRRDKDALLAEIKELKG 137
L++ + L ++ L+++ LAE++ LK
Sbjct: 61 LKRCCETLTEENRRLQKE----LAELRALKT 87
>Os06g0698200
Length = 256
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
KK +L+ EQ LE SF N L +K LAR L L+PRQV VWFQNRRAR K KQ E
Sbjct: 115 KKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEV 174
Query: 103 DYAALRQSYDALRADHDALRRDKDALLAEIKEL 135
D L++ ++L ++ L+ + L E++ L
Sbjct: 175 DCEFLKRCCESLTEENKQLKHE----LMELRRL 203
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,302,475
Number of extensions: 189317
Number of successful extensions: 704
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 22
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)