Os09g0528200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homeodomain leucine zipper protein (Fragment).
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Os09g0528200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homeodomain leucine zipper protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.92 | 0.361 | 11.7 | 0.811 | 1.2 | -1.04 | 0.186 | 0.108 | 0.684 | 4.53 | 26.03 | 15 | -- | -- |
| 58.83 | 0.357 | 11.7 | 0.801 | 1.21 | -1.05 | 0.196 | -- | 0.678 | 4.53 | 26.3 | 14 | -- | -- |
| 58.89 | 0.357 | 11.7 | 0.806 | 1.22 | -1.06 | -- | 0.0995 | 0.666 | 4.51 | 26.45 | 14 | -- | -- |
| 58.89 | 0.357 | 11.7 | 0.796 | 1.22 | -1.06 | -- | -- | 0.667 | 4.51 | 26.45 | 14 | -- | -- |
| 103.91 | 0.475 | 11.7 | 1.11 | -- | -1.97 | -- | 1.09 | 0.821 | -- | 24.11 | 149 | -- | -- |
| 74.09 | 0.404 | 11.7 | 0.659 | 1.53 | -- | 0.551 | -- | 0.641 | 4.17 | -- | -- | -- | -- |
| 74.95 | 0.405 | 11.7 | 0.653 | 1.54 | -- | -- | -- | 0.638 | 4.18 | -- | -- | -- | -- |
| 103.79 | 0.474 | 11.7 | 1.02 | -- | -1.93 | -- | -- | 0.866 | -- | 24.2 | 138 | -- | -- |
| 74.79 | 0.405 | 11.7 | -- | 1.3 | -0.9 | -- | -- | 0.569 | 4.43 | 26.7 | 9 | -- | -- |
| 203.01 | 0.666 | 11.7 | 0.715 | -- | -- | -- | -- | 0.679 | -- | -- | -- | -- | -- |
| 86.19 | 0.434 | 11.7 | -- | 1.55 | -- | -- | -- | 0.565 | 4.17 | -- | -- | -- | -- |
| 130.56 | 0.532 | 11.7 | -- | -- | -1.73 | -- | -- | 0.751 | -- | 24.3 | 144 | -- | -- |
| 216.49 | 0.687 | 11.7 | -- | -- | -- | -- | -- | 0.6 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 5 | 55.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 25 | 56.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 79 | 57.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 88 | 57.75 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 91 | 57.77 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 115 | 57.98 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 18 |
| 121 | 58.00 | temperature | 25 | 90 | > th | dose dependent | sin | 1 | NA |
| 124 | 58.02 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 150 | 58.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 152 | 58.16 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 17 |
| 170 | 58.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 179 | 58.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 327 | 59.10 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 549 | 59.76 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 553 | 59.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 583 | 59.84 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 751 | 60.21 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 800 | 60.34 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 890 | 60.55 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 10 |
| 984 | 60.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 985 | 60.73 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 23 |