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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0649300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Short highly repeated, interspersed DNA (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.62 (0.0545) R2 : 0.717
β1 : 1.01 (0.2) R2dD : 0.0174 R2D : 0.0102
β2 : 5.18 (0.164) R2dC : 0.862 R2C : 0.219
β3 : -3.27 (0.137) R2dE : 0.481 R2E : -0.174
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.262 (0.117) R2dN8 : 0.00388 R2N8 : 0.00335
σ : 1.02
deviance : 477.1
__
_____
C
peak time of C : 4.9
E
wheather : radiation
threshold : 5.386
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.43
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
460.59 1.01 4.61 1.04 5.22 -3.23 3.15 -1.19 0.268 4.97 5.386 10 3.43 --
462.66 1.01 4.6 1.05 5.08 -2.86 2.63 -- 0.304 5.34 5.22 10 2.86 --
477.1 1.03 4.62 1.01 5.18 -3.27 -- -0.00449 0.262 4.9 5.386 10 3.43 --
477.1 1.02 4.62 1.01 5.18 -3.27 -- -- 0.262 4.9 5.386 10 3.43 --
1320.94 1.7 4.67 1.1 -- -1.94 -- -0.667 0.386 -- 0.1352 3 6.48 --
583.86 1.13 4.55 1.01 4.41 -- 2.71 -- 0.402 7.54 -- -- -- --
604.31 1.15 4.55 1.07 4.42 -- -- -- 0.397 7.54 -- -- -- --
670.17 1.21 4.64 1.76 -- -5.07 -- -- 0.734 -- 125.6 648 16.2 --
503.87 1.05 4.65 -- 5.23 -3.31 -- -- 0.148 4.87 5.386 10 3.43 --
1649.16 1.9 4.66 1.14 -- -- -- -- 0.466 -- -- -- -- --
634.57 1.18 4.58 -- 4.43 -- -- -- 0.278 7.52 -- -- -- --
629.75 1.17 4.71 -- -- -4.79 -- -- 0.188 -- 296 576 15.4 --
1683.24 1.91 4.69 -- -- -- -- -- 0.34 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 460.92 temperature 10.0 270 > th dose dependent rect. 2 7
2 461.29 temperature 20.0 90 > th dose independent rect. 4 17
3 463.54 radiation 1.0 30 > th dose independent sin 9 NA
4 464.70 wind 3.0 90 < th dose dependent rect. 4 7
5 464.75 temperature 20.0 270 > th dose independent rect. 3 5
8 465.57 temperature 20.0 90 > th dose independent rect. 4 7
9 465.86 radiation 1.0 30 < th dose independent rect. 22 16
13 467.13 radiation 1.0 30 < th dose independent rect. 22 14
16 467.41 radiation 1.0 30 < th dose independent rect. 22 10
20 468.37 precipitation 0.1 270 < th dose independent rect. 2 7
21 468.37 precipitation 0.1 270 < th dose dependent rect. 2 7
24 469.17 precipitation 0.1 270 < th dose independent rect. 3 17
25 469.17 precipitation 0.1 270 < th dose dependent rect. 3 17
28 469.66 temperature 15.0 270 > th dose dependent rect. 3 5
29 469.67 radiation 10.0 10 < th dose dependent sin 10 NA
36 471.06 precipitation 0.1 270 < th dose independent rect. 2 19
37 471.06 precipitation 0.1 270 < th dose dependent rect. 2 19
46 471.87 wind 3.0 90 < th dose dependent rect. 4 5
47 471.93 radiation 10.0 10 < th dose dependent rect. 22 13
49 472.13 radiation 30.0 270 < th dose independent rect. 2 7
57 472.33 radiation 1.0 30 < th dose dependent rect. 22 16
62 472.57 wind 9.0 270 < th dose dependent rect. 2 7
72 473.17 temperature 15.0 270 > th dose independent rect. 2 19
73 473.19 humidity 80.0 270 > th dose independent rect. 21 5
76 473.40 humidity 50.0 90 > th dose dependent rect. 21 7
81 473.68 humidity 80.0 90 > th dose independent rect. 21 7
85 473.94 radiation 1.0 30 < th dose dependent rect. 22 10
110 474.72 temperature 30.0 270 < th dose independent rect. 2 7
112 474.87 radiation 1.0 30 < th dose independent sin 9 NA
127 475.46 humidity 60.0 10 > th dose dependent rect. 22 6
128 475.50 wind 1.0 270 < th dose independent rect. 4 1
136 475.86 humidity 50.0 270 > th dose dependent rect. 21 5
139 476.04 wind 7.0 270 < th dose independent rect. 2 7
142 476.20 humidity 80.0 720 < th dose dependent rect. 18 14
152 476.54 temperature 10.0 270 > th dose independent rect. 2 7
154 476.54 humidity 50.0 270 > th dose independent rect. 2 7
155 476.54 atmosphere 995.0 270 > th dose independent rect. 2 7
156 476.54 atmosphere 1015.0 270 < th dose independent rect. 2 7
157 476.54 temperature 10.0 270 > th dose independent rect. 9 17
173 477.99 precipitation 0.1 270 < th dose independent rect. 1 21
175 477.99 precipitation 0.1 270 < th dose dependent rect. 1 21
178 478.09 humidity 80.0 10 > th dose independent rect. 22 6
181 478.20 temperature 10.0 270 > th dose independent rect. 20 7
182 478.20 temperature 30.0 270 < th dose independent rect. 20 7
183 478.20 humidity 50.0 270 > th dose independent rect. 20 7
186 478.20 atmosphere 995.0 270 > th dose independent rect. 20 7
187 478.20 radiation 1.0 270 < th dose independent rect. 20 7
193 478.20 atmosphere 1015.0 270 < th dose independent rect. 3 17
194 478.20 radiation 10.0 270 < th dose dependent rect. 20 7
199 478.22 wind 9.0 270 < th dose independent rect. 20 7
209 478.65 wind 9.0 270 < th dose independent rect. 9 17
213 478.79 humidity 80.0 720 < th dose dependent rect. 18 8
214 478.85 wind 9.0 270 < th dose independent rect. 3 17
231 479.48 humidity 80.0 720 < th dose dependent rect. 19 4
234 479.59 precipitation 0.1 270 < th dose independent rect. 16 15
235 479.59 precipitation 0.1 270 < th dose dependent rect. 16 15
240 479.84 temperature 10.0 270 > th dose independent rect. 21 5
241 479.84 temperature 30.0 270 < th dose independent rect. 21 5
242 479.84 humidity 50.0 270 > th dose independent rect. 21 5
245 479.84 atmosphere 995.0 270 > th dose independent rect. 21 5
246 479.84 radiation 1.0 270 < th dose independent rect. 21 5
253 479.84 radiation 10.0 270 < th dose dependent rect. 21 5
257 479.85 wind 9.0 270 < th dose independent rect. 21 5
259 479.90 wind 9.0 90 < th dose dependent rect. 21 7
284 479.98 radiation 40.0 90 < th dose independent rect. 4 18
289 480.11 atmosphere 1015.0 270 < th dose independent rect. 2 19
295 480.31 precipitation 0.1 270 < th dose independent rect. 9 17
297 480.31 precipitation 0.1 270 < th dose dependent rect. 9 17
307 480.56 wind 9.0 270 < th dose independent rect. 2 19
313 480.64 humidity 80.0 270 > th dose independent rect. 22 3
323 480.89 wind 5.0 10 < th dose dependent rect. 4 5
337 481.46 precipitation 0.1 270 < th dose independent rect. 20 7
338 481.46 precipitation 0.1 270 < th dose dependent rect. 20 7
346 481.67 temperature 10.0 270 > th dose independent rect. 14 7
347 481.67 temperature 10.0 270 > th dose independent rect. 21 17
348 481.67 atmosphere 995.0 270 > th dose independent rect. 21 17
358 481.89 precipitation 0.1 270 < th dose independent rect. 21 5
359 481.89 precipitation 0.1 270 < th dose dependent rect. 21 5
370 482.15 wind 1.0 270 > th dose independent rect. 14 7
371 482.15 temperature 10.0 270 > th dose independent rect. 13 9
372 482.15 temperature 10.0 270 > th dose independent rect. 22 15
373 482.15 atmosphere 995.0 270 > th dose independent rect. 22 15
385 482.42 wind 9.0 10 < th dose dependent rect. 22 6
409 482.59 atmosphere 1015.0 270 < th dose independent rect. 14 7
411 482.66 humidity 50.0 270 > th dose dependent rect. 22 3
443 483.13 precipitation 0.1 10 < th dose independent rect. 4 18
444 483.13 precipitation 0.1 10 < th dose dependent rect. 4 18
450 483.36 precipitation 0.1 270 < th dose independent rect. 14 7
451 483.36 precipitation 0.1 270 < th dose dependent rect. 14 7
455 483.46 wind 9.0 270 < th dose independent rect. 14 7
458 483.52 wind 9.0 270 < th dose independent rect. 21 17
465 483.66 wind 9.0 90 < th dose dependent rect. 4 17
469 483.80 wind 9.0 10 < th dose independent rect. 4 18
471 483.83 wind 1.0 270 > th dose independent rect. 13 9
474 483.90 temperature 10.0 10 > th dose dependent rect. 5 17
475 483.92 temperature 15.0 270 > th dose independent rect. 1 21
479 483.96 wind 1.0 270 < th dose dependent rect. 4 1
491 484.16 humidity 80.0 720 < th dose independent rect. 19 2
495 484.20 atmosphere 995.0 270 > th dose independent rect. 9 17
498 484.31 wind 3.0 90 < th dose dependent rect. 4 16
502 484.39 humidity 50.0 270 > th dose independent rect. 22 15
508 484.50 wind 3.0 30 < th dose independent rect. 4 7
509 484.52 radiation 40.0 270 < th dose independent rect. 2 19
510 484.56 precipitation 0.1 270 < th dose independent rect. 13 9
511 484.56 precipitation 0.1 270 < th dose dependent rect. 13 9
517 484.68 wind 9.0 270 < th dose independent rect. 22 15
526 484.91 wind 9.0 270 < th dose dependent rect. 21 5
527 484.96 temperature 15.0 10 > th dose dependent rect. 4 5
528 484.97 wind 9.0 10 < th dose independent rect. 22 6
529 484.97 temperature 10.0 10 > th dose independent rect. 22 6
530 484.97 temperature 30.0 10 < th dose independent rect. 22 6
531 484.97 humidity 50.0 10 > th dose independent rect. 22 6
534 484.97 atmosphere 995.0 10 > th dose independent rect. 22 6
535 484.97 radiation 1.0 10 < th dose independent rect. 22 6
540 484.97 temperature 10.0 10 > th dose independent rect. 4 18
542 484.97 atmosphere 1015.0 10 < th dose independent rect. 4 18
543 484.97 radiation 1.0 10 < th dose dependent rect. 22 6
558 485.23 radiation 1.0 270 < th dose dependent rect. 5 22
566 485.41 radiation 40.0 270 < th dose independent rect. 14 7
570 485.50 radiation 1.0 30 > th dose independent rect. 5 4
583 485.52 humidity 50.0 270 > th dose independent rect. 21 17
586 485.60 wind 9.0 270 < th dose independent rect. 13 9
593 485.64 radiation 40.0 270 < th dose dependent rect. 2 7
691 486.38 temperature 10.0 90 > th dose independent rect. 11 16
711 486.83 wind 9.0 10 < th dose dependent rect. 4 18
755 487.23 temperature 30.0 10 < th dose independent rect. 4 7
795 487.39 atmosphere 995.0 90 > th dose independent rect. 4 17
798 487.46 temperature 10.0 10 > th dose dependent rect. 4 7
801 487.48 wind 9.0 90 < th dose independent rect. 11 16
816 487.64 wind 3.0 270 < th dose independent rect. 3 4
839 488.02 wind 9.0 270 < th dose dependent rect. 22 3
865 488.36 wind 9.0 270 < th dose independent rect. 22 3
866 488.37 temperature 10.0 270 > th dose independent rect. 22 3
867 488.37 temperature 30.0 270 < th dose independent rect. 22 3
868 488.37 humidity 50.0 270 > th dose independent rect. 22 3
871 488.37 atmosphere 995.0 270 > th dose independent rect. 22 3
872 488.37 radiation 1.0 270 < th dose independent rect. 22 3
878 488.37 radiation 1.0 270 < th dose dependent rect. 22 3
942 488.99 temperature 10.0 270 > th dose independent rect. 7 8
943 488.99 atmosphere 1015.0 270 < th dose independent rect. 7 8
944 488.99 temperature 10.0 270 > th dose independent rect. 15 16
945 488.99 radiation 40.0 270 < th dose independent rect. 15 16
948 489.03 wind 1.0 270 > th dose independent rect. 7 8
966 489.30 wind 1.0 270 > th dose independent rect. 22 16
978 489.46 humidity 50.0 270 > th dose independent rect. 9 17
984 489.58 precipitation 0.1 270 < th dose independent rect. 22 3
985 489.58 precipitation 0.1 270 < th dose dependent rect. 22 3
989 489.64 wind 9.0 270 < th dose independent rect. 1 21