BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0649300 Os02g0649300|AK063685
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0649300 Similar to Short highly repeated, interspersed... 439 e-124
Os04g0541700 Homeodomain-like containing protein 191 6e-49
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 129 2e-30
Os08g0481400 Similar to HAHB-7 (Fragment) 122 2e-28
Os03g0188900 Similar to HAHB-7 (Fragment) 118 4e-27
Os09g0470500 Homeodomain leucine zipper protein 116 2e-26
Os02g0729700 Similar to HAHB-7 (Fragment) 107 1e-23
Os08g0416000 Homeodomain leucine zipper protein 103 2e-22
Os09g0379600 Homeodomain-like containing protein 102 3e-22
Os10g0404900 Similar to HAHB-5 (Fragment) 98 5e-21
Os03g0198600 Similar to HAHB-7 (Fragment) 78 7e-15
Os07g0581700 Similar to HAHB-7 (Fragment) 77 9e-15
Os04g0548700 Homeodomain-like containing protein 65 6e-11
Os02g0565600 Similar to Homeodomain leucine zipper protein ... 65 7e-11
>Os02g0649300 Similar to Short highly repeated, interspersed DNA (Fragment)
Length = 261
Score = 439 bits (1130), Expect = e-124, Method: Compositional matrix adjust.
Identities = 220/261 (84%), Positives = 220/261 (84%)
Query: 1 MESDCQFLVAPPQPHMYYDTAAAAVDEAQFLRQMVXXXXXXXXXXXXXXXXXXXXXXXXX 60
MESDCQFLVAPPQPHMYYDTAAAAVDEAQFLRQMV
Sbjct: 1 MESDCQFLVAPPQPHMYYDTAAAAVDEAQFLRQMVAAADHHAAAAGRGGGDGDGGGGGGG 60
Query: 61 XXERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSK 120
ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSK
Sbjct: 61 GGERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSK 120
Query: 121 QIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQDQSXXXXXXXXXXXX 180
QIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQDQS
Sbjct: 121 QIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQDQSGSCDGGGAEGDD 180
Query: 181 XXKRNSVMNASSSGLVEEDYVSCLAVPVVDVSEDGSAACGGSSYEYDHHLDYLGGGQLPD 240
KRNSVMNASSSGLVEEDYVSCLAVPVVDVSEDGSAACGGSSYEYDHHLDYLGGGQLPD
Sbjct: 181 DDKRNSVMNASSSGLVEEDYVSCLAVPVVDVSEDGSAACGGSSYEYDHHLDYLGGGQLPD 240
Query: 241 PFCGMPDLWEIWPMVEWNAVA 261
PFCGMPDLWEIWPMVEWNAVA
Sbjct: 241 PFCGMPDLWEIWPMVEWNAVA 261
>Os04g0541700 Homeodomain-like containing protein
Length = 262
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 130/215 (60%), Gaps = 26/215 (12%)
Query: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
ERKRRFTEEQ+RSLE+ FHA AKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQ+
Sbjct: 58 ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQL 117
Query: 123 EHDYAALRAQYDALHARVESLRQEKLALADQV----------DELRGKLNERQDQSXXXX 172
EHDYAALR++YDALH+RVESL+QEKLAL Q+ +E G +
Sbjct: 118 EHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGNGGAATTAASSSS 177
Query: 173 XXXXXXXXXXKRNSVMNASSSGLVEEDYVSCLAVPVVDVSEDGSAACGG------SSYEY 226
+ NA++ L E SC+ G A C S +
Sbjct: 178 CNGSGSEEVDDDDDKRNAAAGCLDLEPPESCVL---------GGATCATPADVSVESDQC 228
Query: 227 DHHLDYLGGGQLPDPFCGMPDLWEIWPMVEWNAVA 261
D LDY G P+ FC P+LWE WP+VEWNAVA
Sbjct: 229 DDQLDY-DEGLFPESFCATPELWEPWPLVEWNAVA 262
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 83/101 (82%), Gaps = 1/101 (0%)
Query: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
+RK+RF+EEQ++SLE+ F A + KLEPR+K +LARELGLQPRQVAIWFQNKRARW+SKQ+
Sbjct: 51 DRKKRFSEEQIKSLESMF-ATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQL 109
Query: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNE 163
E +Y+ALR YDAL ESL++EKLAL Q+++L L E
Sbjct: 110 EREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQE 150
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 79/101 (78%), Gaps = 1/101 (0%)
Query: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
E+KRR + EQVR+LE +F KLEP KA LAR+LGLQPRQVA+WFQN+RARW++KQ+
Sbjct: 42 EKKRRLSVEQVRALERSFETEN-KLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQL 100
Query: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNE 163
E DYAALR YDAL A ++LR++K AL ++ EL+GKL +
Sbjct: 101 ERDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGD 141
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
E+KRR EQVR+LE +F KL+P KA +AR+LGLQPRQVA+WFQN+RARW++KQ+
Sbjct: 71 EKKRRLALEQVRALERSFDTDN-KLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQL 129
Query: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKL 161
E D+AALRA++DAL A ++LR++K ALA ++ ELR KL
Sbjct: 130 ERDFAALRARHDALRADCDALRRDKDALAAEIRELREKL 168
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
E+KRR + EQVR+LE +F KLEP KA LAR+LGLQPRQVA+WFQN+RARW++KQ+
Sbjct: 50 EKKRRLSVEQVRALERSFEVEN-KLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQL 108
Query: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQ 165
E DYAALR YD+L ++LR++K AL ++ EL+ KL + +
Sbjct: 109 ERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEE 151
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
E+KRR T EQV LE +F KLEP K ELAR+LGLQPRQVA+WFQN+RARW++KQ+
Sbjct: 76 EKKRRLTPEQVHLLERSFEEEN-KLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQL 134
Query: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQ 165
E D+ L+A +DAL A ++L Q+ L QV L KL E++
Sbjct: 135 ERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKE 177
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Query: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
E+KRR T EQV+ LE +F KLEP K ELAR LG+ PRQVA+WFQN+RARW++KQ+
Sbjct: 85 EKKRRLTAEQVQMLERSFEEEN-KLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQL 143
Query: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQDQSXXXXXXXXXXXXXX 182
EHD+ L+A YDAL A +L + L QV L KL +++
Sbjct: 144 EHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKETSPSSATITTAAQEVDQ 203
Query: 183 KRNSVMNASSSGLVEED 199
AS++G D
Sbjct: 204 PDEHTEAASTTGFATVD 220
>Os09g0379600 Homeodomain-like containing protein
Length = 286
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 68/98 (69%)
Query: 64 RKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIE 123
RKRR T EQVR+LE +F + KLEP K+ELAR LG+ PRQVA+WFQN+RARW++KQ+E
Sbjct: 48 RKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLE 107
Query: 124 HDYAALRAQYDALHARVESLRQEKLALADQVDELRGKL 161
D+ LRA +D L A +L + +L QV L KL
Sbjct: 108 LDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEKL 145
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 62/80 (77%), Gaps = 1/80 (1%)
Query: 64 RKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIE 123
+KRR + EQVR+LE +F + KLEP KA+LAR LGLQPRQVAIWFQN+RARW++KQ+E
Sbjct: 104 KKRRLSVEQVRTLERSFESGN-KLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLE 162
Query: 124 HDYAALRAQYDALHARVESL 143
D+ ALR Q DA A ++L
Sbjct: 163 KDFDALRRQLDAARAENDAL 182
>Os03g0198600 Similar to HAHB-7 (Fragment)
Length = 239
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
Query: 64 RKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIE 123
+KRR ++EQ R LE +F R KLE K +LA ELGL +QVA+WFQN+RAR +SK +E
Sbjct: 61 KKRRLSDEQARFLEMSFKKER-KLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLME 119
Query: 124 HDYAALRAQYDAL-----HARVESLR-QEKLALADQVDELRGKL 161
++A LR+ +DA+ H E L+ +E+LA V+E + KL
Sbjct: 120 EEFAKLRSAHDAVVLQNCHLETELLKLKERLA---DVEEEKAKL 160
>Os07g0581700 Similar to HAHB-7 (Fragment)
Length = 240
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 63/96 (65%), Gaps = 7/96 (7%)
Query: 64 RKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIE 123
+KRR ++EQV LE +F R KLE K LA ELGL P+QVA+WFQN+RAR +SK +E
Sbjct: 62 KKRRLSDEQVEMLELSFREER-KLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLE 120
Query: 124 HDYAALRAQYDA-----LHARVESLR-QEKLALADQ 153
+++ L+ +DA H E LR +E+L +A++
Sbjct: 121 EEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEE 156
>Os04g0548700 Homeodomain-like containing protein
Length = 247
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 64 RKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIE 123
+K R +++Q LE +F L PR+KA LA++LGL+PRQV +WFQN+RAR + KQ E
Sbjct: 82 KKLRLSKDQSAVLEDSFR-EHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTE 140
Query: 124 HDYAALRAQYDALHARVESLRQEKLALADQVDELRG 159
D L+ E+L +E L +V ELR
Sbjct: 141 VDCEFLKRC-------CETLTEENRRLQKEVQELRA 169
>Os02g0565600 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 349
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 64 RKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIE 123
+K R ++EQ LE +F + L P++K++LA L L+PRQV +WFQN+RAR + KQ E
Sbjct: 153 KKLRLSKEQSSFLEDSFK-EHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTE 211
Query: 124 HDYAALRAQYDALHARVESLRQEKLALADQVDELRGKL 161
D + L E L +E L +V ELRG L
Sbjct: 212 VD-------CEHLKRCCERLTRENRRLQREVAELRGTL 242
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,286,569
Number of extensions: 307617
Number of successful extensions: 1116
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1102
Number of HSP's successfully gapped: 16
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)