Os03g0188900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HAHB-7 (Fragment).
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Os03g0188900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HAHB-7 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.48 | 0.485 | 9.21 | -1.4 | 1.44 | -0.343 | 0.0166 | -4.63 | 0.2 | 6.94 | 19.9 | 6 | -- | -- |
| 121.56 | 0.517 | 9.13 | -0.603 | 1.37 | -0.948 | -0.197 | -- | 0.371 | 7.3 | 25.9 | 15 | -- | -- |
| 106.4 | 0.48 | 9.21 | -1.4 | 1.44 | -0.342 | -- | -4.61 | 0.201 | 6.94 | 19.9 | 3 | -- | -- |
| 121.55 | 0.513 | 9.13 | -0.606 | 1.36 | -0.936 | -- | -- | 0.374 | 7.27 | 25.8 | 14 | -- | -- |
| 190.77 | 0.643 | 9.22 | -1.09 | -- | -1.37 | -- | -5.11 | 0.358 | -- | 16.14 | 283 | -- | -- |
| 134.09 | 0.543 | 9.14 | -0.749 | 1.53 | -- | 0.421 | -- | 0.33 | 6.46 | -- | -- | -- | -- |
| 134.51 | 0.543 | 9.14 | -0.742 | 1.53 | -- | -- | -- | 0.329 | 6.51 | -- | -- | -- | -- |
| 180.66 | 0.626 | 9.13 | -0.437 | -- | -1.62 | -- | -- | 0.512 | -- | 24.4 | 358 | -- | -- |
| 130.79 | 0.533 | 9.11 | -- | 1.32 | -1.07 | -- | -- | 0.453 | 7.41 | 25.45 | 17 | -- | -- |
| 256.9 | 0.749 | 9.17 | -0.704 | -- | -- | -- | -- | 0.36 | -- | -- | -- | -- | -- |
| 149.03 | 0.571 | 9.12 | -- | 1.52 | -- | -- | -- | 0.411 | 6.54 | -- | -- | -- | -- |
| 185.54 | 0.634 | 9.12 | -- | -- | -1.69 | -- | -- | 0.566 | -- | 24.39 | 363 | -- | -- |
| 269.98 | 0.767 | 9.15 | -- | -- | -- | -- | -- | 0.438 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.19 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 3 | 102.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 6 | 103.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 76 | 105.61 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 77 | 105.64 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 19 |
| 79 | 105.75 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 18 |
| 87 | 105.89 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 18 |
| 92 | 106.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 99 | 106.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 104 | 106.34 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 106 | 106.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 118 | 106.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 120 | 106.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 123 | 106.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 124 | 106.58 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 125 | 106.61 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 129 | 106.65 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 21 |
| 135 | 106.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 146 | 106.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 154 | 107.00 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 212 | 107.87 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 288 | 108.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 309 | 108.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 327 | 108.95 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 17 |
| 379 | 109.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 392 | 109.45 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 405 | 109.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 410 | 109.60 | radiation | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 464 | 110.00 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 472 | 110.05 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 15 |
| 512 | 110.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 519 | 110.36 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 23 |
| 544 | 110.42 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 549 | 110.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 552 | 110.47 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 21 |
| 561 | 110.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 606 | 110.67 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 616 | 110.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 623 | 110.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 630 | 110.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 633 | 110.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 637 | 110.87 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 662 | 110.97 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 18 |
| 675 | 111.03 | atmosphere | 995 | 270 | > th | dose independent | rect. | 16 | 14 |
| 710 | 111.20 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 711 | 111.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 731 | 111.28 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 752 | 111.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 830 | 111.71 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 21 |
| 850 | 111.78 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 14 |
| 875 | 111.87 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 877 | 111.87 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 23 |
| 883 | 111.89 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 23 |
| 895 | 111.93 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 921 | 112.03 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 928 | 112.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 994 | 112.27 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 22 |