BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0188900 Os03g0188900|AK101522
(311 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0188900 Similar to HAHB-7 (Fragment) 444 e-125
Os08g0481400 Similar to HAHB-7 (Fragment) 121 6e-28
Os09g0470500 Homeodomain leucine zipper protein 117 1e-26
Os10g0404900 Similar to HAHB-5 (Fragment) 104 9e-23
Os02g0729700 Similar to HAHB-7 (Fragment) 101 6e-22
Os08g0416000 Homeodomain leucine zipper protein 99 5e-21
Os09g0379600 Homeodomain-like containing protein 93 2e-19
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 86 4e-17
Os02g0649300 Similar to Short highly repeated, interspersed... 82 5e-16
Os04g0541700 Homeodomain-like containing protein 82 5e-16
Os07g0581700 Similar to HAHB-7 (Fragment) 76 3e-14
Os03g0198600 Similar to HAHB-7 (Fragment) 73 3e-13
Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza... 69 4e-12
Os04g0548700 Homeodomain-like containing protein 67 2e-11
Os06g0140400 Similar to HAHB-6 (Fragment) 65 7e-11
Os06g0140700 Similar to Homeodomain leucine zipper protein ... 65 8e-11
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 444 bits (1143), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/298 (76%), Positives = 228/298 (76%)
Query: 14 QGEDLAFSEEGSLPAVTMEQKXXXXXXXXXXXXXXXXXXXXXGGHAAQSPSPSCGLGEKK 73
QGEDLAFSEEGSLPAVTMEQK GGHAAQSPSPSCGLGEKK
Sbjct: 14 QGEDLAFSEEGSLPAVTMEQKDEAEMEEVDEEEEEEVDEDMAGGHAAQSPSPSCGLGEKK 73
Query: 74 RRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLEXXX 133
RRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE
Sbjct: 74 RRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDF 133
Query: 134 XXXXXXXXXXXXXXXXXXXXXXXXXXEIRELREKLPTKPADTAASVKVEXXXXXXXXXXX 193
EIRELREKLPTKPADTAASVKVE
Sbjct: 134 AALRARHDALRADCDALRRDKDALAAEIRELREKLPTKPADTAASVKVEAGNDAAAGAAA 193
Query: 194 XTVCKDGXXXXXXXXVVFNDEASPYSGAAFIGFGPSFLVDDASAATVGCSSSLPALESKW 253
TVCKDG VVFNDEASPYSGAAFIGFGPSFLVDDASAATVGCSSSLPALESKW
Sbjct: 194 ATVCKDGSSDDSDSSVVFNDEASPYSGAAFIGFGPSFLVDDASAATVGCSSSLPALESKW 253
Query: 254 HGPYSDDSCKGGVYGFTEEWLAACSGEMAGNDAAGFFSDEHASNLNFGWCASGNEGWE 311
HGPYSDDSCKGGVYGFTEEWLAACSGEMAGNDAAGFFSDEHASNLNFGWCASGNEGWE
Sbjct: 254 HGPYSDDSCKGGVYGFTEEWLAACSGEMAGNDAAGFFSDEHASNLNFGWCASGNEGWE 311
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 117/244 (47%), Gaps = 22/244 (9%)
Query: 71 EKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
EKKRRL++EQVRALERSF+T+NKL+P+RKAR+ARDLGLQPRQVAVWFQNRRARWKTKQLE
Sbjct: 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 101
Query: 131 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIRELREKLPTKPADTA-ASVKVEXXXXXXX 189
EI+EL+ KL + A + +SVK E
Sbjct: 102 RDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDEDAAASFSSVKEEEDPAASD 161
Query: 190 XXXXXTVCKDGXXXXXXXXVVFNDEASPYSGAAFIGFGPSFLVDDASAATVGCSSSLPAL 249
T G V+ + E P+ A + + + A V ++ L
Sbjct: 162 ADPPATGAPQGSSESDSSAVLNDAEILPHKPAPAAAADAA--ASEETEAVVTGAALLHHA 219
Query: 250 ESKWHG---PYSDDSCKGGVYGFTEEWLAACSGEMAGNDAAGFFSDEHASNLNFGWCASG 306
E +HG DD F + AAC GFF+DEH +L W A
Sbjct: 220 EVFFHGQLLKVDDDEA-----AFLGDDGAAC---------GGFFADEHLPSL--PWWAEP 263
Query: 307 NEGW 310
E W
Sbjct: 264 TEQW 267
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 69/101 (68%)
Query: 68 GLGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTK 127
G GEKKRRL++EQVRALERSF+ +NKL+P+RKAR+ARDLGLQPRQVAVWFQNRRARWKTK
Sbjct: 47 GGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTK 106
Query: 128 QLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIRELREKL 168
QLE EI+EL+ KL
Sbjct: 107 QLERDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKL 147
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 56/59 (94%)
Query: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
KKRRL++EQVR LERSF++ NKL+P+RKA++AR LGLQPRQVA+WFQNRRARWKTKQLE
Sbjct: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLE 162
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 53/62 (85%)
Query: 69 LGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQ 128
L EKKRRL EQV LERSF+ +NKL+P+RK +AR LGLQPRQVAVWFQNRRARWKTKQ
Sbjct: 74 LPEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQ 133
Query: 129 LE 130
LE
Sbjct: 134 LE 135
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/60 (75%), Positives = 52/60 (86%)
Query: 71 EKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
EKKRRL EQV+ LERSF+ +NKL+P+RK +AR LG+ PRQVAVWFQNRRARWKTKQLE
Sbjct: 85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLE 144
>Os09g0379600 Homeodomain-like containing protein
Length = 286
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 66 SCGLGEKKRRLALEQVRALERSFDTDN-KLDPDRKARIARDLGLQPRQVAVWFQNRRARW 124
S +KRRL EQVRALERSF+ + KL+P+RK+ +AR LG+ PRQVAVWFQNRRARW
Sbjct: 42 SSSAAARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARW 101
Query: 125 KTKQLE 130
KTKQLE
Sbjct: 102 KTKQLE 107
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 51/60 (85%)
Query: 71 EKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
++K+R + EQ+++LE F T KL+P +K ++AR+LGLQPRQVA+WFQN+RARWK+KQLE
Sbjct: 51 DRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLE 110
>Os02g0649300 Similar to Short highly repeated, interspersed DNA (Fragment)
Length = 261
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 71 EKKRRLALEQVRALERSFDTDN-KLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQL 129
E+KRR EQVR+LE +F KL+P KA +AR+LGLQPRQVA+WFQN+RARW++KQ+
Sbjct: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
Query: 130 E 130
E
Sbjct: 123 E 123
>Os04g0541700 Homeodomain-like containing protein
Length = 262
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 71 EKKRRLALEQVRALERSFDTDN-KLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQL 129
E+KRR EQ+R+LE F + KL+P KA +AR+LGLQPRQVA+WFQN+RARW++KQL
Sbjct: 58 ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQL 117
Query: 130 E 130
E
Sbjct: 118 E 118
>Os07g0581700 Similar to HAHB-7 (Fragment)
Length = 240
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 44/59 (74%)
Query: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
KKRRL+ EQV LE SF + KL+ RK +A +LGL P+QVAVWFQNRRAR K+K LE
Sbjct: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLE 120
>Os03g0198600 Similar to HAHB-7 (Fragment)
Length = 239
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
KKRRL+ EQ R LE SF + KL+ RK ++A +LGL +QVAVWFQNRRAR K+K +E
Sbjct: 61 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLME 119
>Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%)
Query: 68 GLGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTK 127
G KK RL+ +Q LE +F N L+P +KA +AR L L+PRQV VWFQNRRAR K K
Sbjct: 153 GGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLK 212
Query: 128 QLE 130
Q E
Sbjct: 213 QTE 215
>Os04g0548700 Homeodomain-like containing protein
Length = 247
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 67 CGL--GEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARW 124
CG+ KK RL+ +Q LE SF L+P +KA +A+ LGL+PRQV VWFQNRRAR
Sbjct: 75 CGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRART 134
Query: 125 KTKQLE 130
K KQ E
Sbjct: 135 KLKQTE 140
>Os06g0140400 Similar to HAHB-6 (Fragment)
Length = 256
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 40/63 (63%)
Query: 68 GLGEKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTK 127
G KK RL+ +Q LE F T + L P +K +A+ L L+PRQV VWFQNRRAR K K
Sbjct: 90 GGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLK 149
Query: 128 QLE 130
Q E
Sbjct: 150 QTE 152
>Os06g0140700 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 308
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 40/59 (67%)
Query: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
KK RL+ +Q LE F T + L+P +K +A LGL+PRQV VWFQNRRAR K KQ E
Sbjct: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,833,528
Number of extensions: 322247
Number of successful extensions: 733
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 16
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)