Os02g0729700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HAHB-7 (Fragment).
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Os02g0729700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HAHB-7 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.9 | 0.215 | 15.5 | 0.779 | 0.545 | -0.68 | -0.489 | -0.533 | 0.39 | 23.1 | -4.861 | 125 | -- | -- |
| 21.16 | 0.214 | 15.5 | 0.781 | 0.562 | -0.644 | -0.203 | -- | 0.389 | 23.2 | -7.313 | 124 | -- | -- |
| 21.34 | 0.215 | 15.5 | 0.789 | 0.566 | -0.639 | -- | -0.00968 | 0.389 | 23.2 | -7.899 | 124 | -- | -- |
| 21.34 | 0.215 | 15.5 | 0.79 | 0.566 | -0.639 | -- | -- | 0.39 | 23.2 | -8.014 | 124 | -- | -- |
| 29.27 | 0.252 | 15.5 | 0.787 | -- | -1.25 | -- | -0.0755 | 0.405 | -- | -27.72 | 67 | -- | -- |
| 26.08 | 0.239 | 15.6 | 0.776 | 0.911 | -- | -0.173 | -- | 0.357 | 23.9 | -- | -- | -- | -- |
| 26.21 | 0.24 | 15.6 | 0.783 | 0.912 | -- | -- | -- | 0.357 | 23.9 | -- | -- | -- | -- |
| 29.25 | 0.252 | 15.5 | 0.789 | -- | -1.25 | -- | -- | 0.402 | -- | -31.42 | 59 | -- | -- |
| 37.77 | 0.286 | 15.6 | -- | 0.583 | -0.619 | -- | -- | 0.301 | 23.3 | -11.26 | 122 | -- | -- |
| 78.55 | 0.414 | 15.5 | 0.81 | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
| 42.35 | 0.304 | 15.6 | -- | 0.922 | -- | -- | -- | 0.27 | 24 | -- | -- | -- | -- |
| 45.53 | 0.314 | 15.5 | -- | -- | -1.27 | -- | -- | 0.311 | -- | -21.01 | 58 | -- | -- |
| 95.88 | 0.457 | 15.6 | -- | -- | -- | -- | -- | 0.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 18 |
| 9 | 20.75 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 16 | 20.78 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 20 | 20.83 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 32 | 20.95 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 33 | 20.96 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 45 | 21.21 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 46 | 21.21 | radiation | 40 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 53 | 21.23 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 66 | 21.24 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 5 |
| 67 | 21.24 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 134 | 21.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 135 | 21.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 152 | 21.33 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 154 | 21.33 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 170 | 21.35 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 176 | 21.37 | radiation | 40 | 270 | < th | dose dependent | sin | 3 | NA |
| 179 | 21.37 | radiation | 40 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 195 | 21.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 13 |
| 202 | 21.42 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 238 | 21.45 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 13 |
| 243 | 21.46 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 247 | 21.47 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 9 |
| 270 | 21.48 | radiation | 40 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 282 | 21.52 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 318 | 21.56 | radiation | 40 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 342 | 21.59 | radiation | 20 | 270 | < th | dose independent | sin | 4 | NA |
| 357 | 21.59 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 358 | 21.59 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 393 | 21.65 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 12 |
| 446 | 21.67 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 451 | 21.69 | radiation | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 459 | 21.71 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 10 | 8 |
| 547 | 21.74 | temperature | 30 | 270 | > th | dose independent | sin | 5 | NA |
| 615 | 21.77 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 20 |
| 622 | 21.77 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 12 |
| 628 | 21.78 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 725 | 21.80 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 760 | 21.83 | radiation | 20 | 90 | < th | dose independent | rect. | 7 | 23 |
| 784 | 21.84 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 885 | 21.89 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 904 | 21.90 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 907 | 21.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 2 |
| 938 | 21.92 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 941 | 21.93 | radiation | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 942 | 21.93 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 21 | NA |
| 951 | 21.94 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 22 |
| 962 | 21.95 | radiation | 40 | 10 | < th | dose dependent | no | NA | NA |
| 984 | 21.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 995 | 21.97 | radiation | 40 | 270 | < th | dose independent | rect. | 23 | 23 |