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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0581700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to HAHB-7 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0163) R2 : 0.00411
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0471 (0.0343) R2dN8 : 0.00531 R2N8 : 0.00411
σ : 0.307
deviance : 43.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.27 0.302 2.81 0.0526 0.0888 -0.185 0.155 2.13 0.0529 7.76 0.1174 9 -- --
42.37 0.303 2.82 0.0406 0.078 0.29 0.095 -- 0.0565 7.63 0.1 8 -- --
41.31 0.299 2.81 0.056 0.0944 -0.197 -- 2.09 0.0518 6.73 0.1248 8 -- --
42.38 0.303 2.82 0.0416 0.0802 0.27 -- -- 0.0571 6.81 0.08729 8 -- --
41.76 0.301 2.81 0.0564 -- -0.14 -- 1.97 0.0548 -- 0.07265 8 -- --
42.77 0.307 2.82 0.0551 0.0904 -- 0.0348 -- 0.0517 6.32 -- -- -- --
42.77 0.306 2.82 0.0554 0.0907 -- -- -- 0.0515 6.2 -- -- -- --
42.72 0.304 2.82 0.0419 -- 0.294 -- -- 0.059 -- 0.08837 8 -- --
42.43 0.303 2.82 -- 0.0803 0.28 -- -- 0.0528 6.81 0.08015 8 -- --
43.2 0.307 2.82 0.0579 -- -- -- -- 0.0535 -- -- -- -- --
42.86 0.306 2.82 -- 0.0914 -- -- -- 0.0454 6.17 -- -- -- --
42.76 0.305 2.82 -- -- 0.304 -- -- 0.0547 -- 0.09222 8 -- --
43.29 0.307 2.82 -- -- -- -- -- 0.0471 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.32 temperature 25.0 30 > th dose dependent rect. 6 1
3 38.68 atmosphere 1010.0 30 < th dose independent rect. 6 1
4 38.79 radiation 10.0 30 < th dose independent rect. 6 1
5 38.93 wind 3.0 30 > th dose dependent rect. 6 1
8 39.04 atmosphere 1010.0 30 < th dose dependent rect. 6 1
10 39.70 wind 3.0 30 > th dose independent rect. 6 1
14 40.02 humidity 90.0 30 < th dose dependent rect. 6 1
21 40.36 radiation 1.0 10 > th dose dependent rect. 6 1
22 40.39 wind 7.0 30 < th dose independent rect. 7 23
25 40.44 temperature 25.0 30 > th dose independent rect. 6 1
27 40.50 atmosphere 1010.0 30 < th dose independent rect. 7 23
28 40.51 radiation 20.0 30 < th dose dependent rect. 6 1
34 40.63 wind 1.0 30 < th dose independent rect. 6 1
39 40.74 temperature 20.0 90 < th dose independent rect. 22 1
44 40.84 wind 9.0 1440 < th dose independent rect. 7 1
45 40.84 temperature 10.0 1440 > th dose independent rect. 7 1
49 40.84 temperature 30.0 1440 < th dose independent rect. 7 1
53 40.84 humidity 50.0 1440 > th dose independent rect. 7 1
58 40.84 atmosphere 995.0 1440 > th dose independent rect. 7 1
59 40.84 atmosphere 1015.0 1440 < th dose independent rect. 7 1
61 40.84 temperature 10.0 1440 > th dose independent rect. 8 23
64 40.86 wind 1.0 10 < th dose independent rect. 23 1
67 40.86 humidity 90.0 30 < th dose independent rect. 6 1
69 40.86 wind 1.0 10 < th dose dependent rect. 23 1
76 40.90 atmosphere 1005.0 30 > th dose independent rect. 6 1
85 40.91 wind 1.0 10 < th dose dependent rect. 11 14
89 40.92 humidity 80.0 30 > th dose independent rect. 6 1
93 40.93 wind 5.0 30 < th dose independent rect. 6 1
96 40.93 temperature 10.0 30 > th dose independent rect. 6 1
98 40.93 temperature 30.0 30 < th dose independent rect. 6 1
99 40.93 humidity 50.0 30 > th dose independent rect. 6 1
104 40.93 radiation 1.0 30 > th dose independent rect. 6 1
108 40.93 precipitation 0.1 30 < th dose independent rect. 6 1
109 40.93 temperature 10.0 30 > th dose independent rect. 7 23
110 40.93 precipitation 0.1 30 < th dose dependent rect. 6 1
120 40.94 wind 1.0 90 < th dose dependent rect. 22 1
132 40.95 temperature 20.0 10 < th dose dependent rect. 24 1
137 40.97 wind 1.0 10 < th dose independent rect. 11 14
157 41.02 wind 1.0 10 < th dose dependent rect. 5 19
162 41.05 radiation 10.0 4320 > th dose independent rect. 7 2
164 41.05 wind 1.0 10 < th dose independent rect. 17 8
177 41.07 wind 5.0 720 > th dose independent rect. 4 1
178 41.07 wind 5.0 720 > th dose dependent rect. 4 1
179 41.07 humidity 50.0 30 > th dose dependent rect. 6 1
185 41.08 wind 1.0 90 < th dose independent rect. 22 1
202 41.10 wind 9.0 30 < th dose dependent rect. 6 1
209 41.11 radiation 40.0 1440 < th dose independent rect. 7 1
210 41.11 precipitation 0.1 1440 < th dose independent rect. 15 1
212 41.11 wind 1.0 10 < th dose independent rect. 5 20
214 41.11 precipitation 0.1 1440 < th dose dependent rect. 15 1
247 41.15 precipitation 0.1 1440 > th dose independent rect. 15 1
248 41.15 wind 1.0 10 < th dose dependent sin 16 NA
250 41.15 wind 9.0 90 > th dose dependent rect. 10 1
251 41.15 precipitation 0.1 1440 > th dose dependent rect. 15 1
254 41.16 wind 9.0 90 > th dose independent rect. 10 1
323 41.18 atmosphere 995.0 30 > th dose dependent rect. 6 1
345 41.18 wind 1.0 90 < th dose dependent rect. 11 13
389 41.21 precipitation 0.1 1440 > th dose independent rect. 9 4
396 41.21 precipitation 0.1 1440 > th dose dependent rect. 9 4
408 41.22 wind 1.0 10 > th dose independent rect. 7 23
459 41.25 precipitation 0.1 1440 > th dose independent rect. 8 1
461 41.25 wind 1.0 90 < th dose independent rect. 11 13
463 41.25 precipitation 0.1 1440 > th dose dependent rect. 8 1
478 41.25 atmosphere 1005.0 30 > th dose dependent rect. 11 20
480 41.26 atmosphere 1010.0 10 > th dose dependent sin 20 NA
492 41.26 atmosphere 1005.0 30 > th dose dependent rect. 11 13
502 41.27 radiation 10.0 4320 < th dose independent rect. 8 1
507 41.27 radiation 20.0 4320 < th dose dependent rect. 8 1
539 41.28 wind 7.0 10 > th dose dependent rect. 11 1
573 41.29 atmosphere 1005.0 30 > th dose dependent rect. 22 14
610 41.31 wind 9.0 10 > th dose independent rect. 11 1
612 41.31 humidity 90.0 1440 > th dose independent rect. 10 1
650 41.32 humidity 90.0 1440 > th dose dependent rect. 10 1
676 41.33 humidity 90.0 1440 > th dose dependent rect. 15 2
745 41.35 wind 1.0 10 < th dose dependent rect. 2 23
747 41.36 precipitation 0.1 1440 < th dose independent rect. 9 1
756 41.36 precipitation 0.1 1440 < th dose dependent rect. 9 1
767 41.37 wind 1.0 90 > th dose independent sin 16 NA
769 41.37 atmosphere 1010.0 10 > th dose independent rect. 11 13
781 41.38 wind 1.0 10 > th dose independent sin 16 NA
809 41.38 atmosphere 1005.0 30 > th dose dependent rect. 6 18
894 41.40 atmosphere 1010.0 270 > th dose dependent rect. 11 9
895 41.40 atmosphere 1010.0 270 > th dose dependent rect. 8 13
984 41.43 wind 1.0 10 < th dose independent sin 14 NA