BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0581700 Os07g0581700|AK121889
(240 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0581700 Similar to HAHB-7 (Fragment) 338 2e-93
Os03g0198600 Similar to HAHB-7 (Fragment) 130 1e-30
Os08g0416000 Homeodomain leucine zipper protein 96 2e-20
Os02g0729700 Similar to HAHB-7 (Fragment) 93 1e-19
Os09g0470500 Homeodomain leucine zipper protein 89 2e-18
Os08g0481400 Similar to HAHB-7 (Fragment) 89 4e-18
Os09g0379600 Homeodomain-like containing protein 88 5e-18
Os03g0188900 Similar to HAHB-7 (Fragment) 88 7e-18
Os10g0404900 Similar to HAHB-5 (Fragment) 85 5e-17
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 82 2e-16
Os02g0649300 Similar to Short highly repeated, interspersed... 76 2e-14
Os04g0541700 Homeodomain-like containing protein 71 6e-13
>Os07g0581700 Similar to HAHB-7 (Fragment)
Length = 240
Score = 338 bits (867), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/240 (72%), Positives = 175/240 (72%)
Query: 1 MDRYGEKQQQQQMFASYVDASLLAASGEVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MDRYGEKQQQQQMFASYVDASLLAASGEVQ
Sbjct: 1 MDRYGEKQQQQQMFASYVDASLLAASGEVQGERPRARRRRRRGARCVGGGGGGGEVDGGD 60
Query: 61 XKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLE 120
KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLE
Sbjct: 61 PKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLE 120
Query: 121 EEFSKLKHAHDAAILHKCHXXXXXXXXXXXXXXXXXXXXXXXSAAGSHTASGEGGDIMGL 180
EEFSKLKHAHDAAILHKCH SAAGSHTASGEGGDIMGL
Sbjct: 121 EEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRLRSAAGSHTASGEGGDIMGL 180
Query: 181 GGSGACVAGSPSSSFSTGTCQPPSFXXXXXXXXXXXVYVPEYGGYADNSVVEWFSLYGLI 240
GGSGACVAGSPSSSFSTGTCQPPSF VYVPEYGGYADNSVVEWFSLYGLI
Sbjct: 181 GGSGACVAGSPSSSFSTGTCQPPSFGGGDHLGDDDLVYVPEYGGYADNSVVEWFSLYGLI 240
>Os03g0198600 Similar to HAHB-7 (Fragment)
Length = 239
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 68/78 (87%)
Query: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
KKRRLSDEQ LE+SF++ERKLET RKV LA+ELGLD KQVAVWFQNRRARHKSKL+EE
Sbjct: 61 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEE 120
Query: 122 EFSKLKHAHDAAILHKCH 139
EF+KL+ AHDA +L CH
Sbjct: 121 EFAKLRSAHDAVVLQNCH 138
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 55/71 (77%)
Query: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
KKRRL+ EQV+MLE SF EE KLE RK LA LG+ P+QVAVWFQNRRAR K+K LE
Sbjct: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
Query: 122 EFSKLKHAHDA 132
+F +LK A+DA
Sbjct: 146 DFDRLKAAYDA 156
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 54/71 (76%)
Query: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
KKRRL+ EQV +LE SF EE KLE RK LA +LGL P+QVAVWFQNRRAR K+K LE
Sbjct: 77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLER 136
Query: 122 EFSKLKHAHDA 132
+F +LK + DA
Sbjct: 137 DFDRLKASFDA 147
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 55/74 (74%)
Query: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
KKRRLS EQV LE SF E KLE RK LA +LGL P+QVAVWFQNRRAR K+K LE
Sbjct: 51 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 110
Query: 122 EFSKLKHAHDAAIL 135
+++ L+H++D+ L
Sbjct: 111 DYAALRHSYDSLRL 124
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 53/71 (74%)
Query: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
KKRRLS EQV LE SF E KLE RK LA +LGL P+QVAVWFQNRRAR K+K LE
Sbjct: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
Query: 122 EFSKLKHAHDA 132
+++ L+ ++DA
Sbjct: 103 DYAALRQSYDA 113
>Os09g0379600 Homeodomain-like containing protein
Length = 286
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Query: 62 KKRRLSDEQVEMLELSFREE-RKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLE 120
+KRRL+ EQV LE SF EE RKLE RK LA LG+ P+QVAVWFQNRRAR K+K LE
Sbjct: 48 RKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLE 107
Query: 121 EEFSKLKHAHD 131
+F +L+ AHD
Sbjct: 108 LDFDRLRAAHD 118
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 52/71 (73%)
Query: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
KKRRL+ EQV LE SF + KL+ RK +A +LGL P+QVAVWFQNRRAR K+K LE
Sbjct: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLER 131
Query: 122 EFSKLKHAHDA 132
+F+ L+ HDA
Sbjct: 132 DFAALRARHDA 142
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 50/72 (69%)
Query: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
KKRRLS EQV LE SF KLE RK LA LGL P+QVA+WFQNRRAR K+K LE+
Sbjct: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
Query: 122 EFSKLKHAHDAA 133
+F L+ DAA
Sbjct: 164 DFDALRRQLDAA 175
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
+K+R S+EQ++ LE F + KLE +K+ LA ELGL P+QVA+WFQN+RAR KSK LE
Sbjct: 52 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLER 111
Query: 122 EFSKLKHAHDAAI 134
E+S L+ +DA +
Sbjct: 112 EYSALRDDYDALL 124
>Os02g0649300 Similar to Short highly repeated, interspersed DNA (Fragment)
Length = 261
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 62 KKRRLSDEQVEMLELSFREER-KLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLE 120
+KRR ++EQV LE +F R KLE K LA ELGL P+QVA+WFQN+RAR +SK +E
Sbjct: 64 RKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIE 123
Query: 121 EEFSKLKHAHDA 132
+++ L+ +DA
Sbjct: 124 HDYAALRAQYDA 135
>Os04g0541700 Homeodomain-like containing protein
Length = 262
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 62 KKRRLSDEQVEMLELSFREER-KLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLE 120
+KRR ++EQ+ LE F KLE K LA ELGL P+QVA+WFQN+RAR +SK LE
Sbjct: 59 RKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLE 118
Query: 121 EEFSKLKHAHDA 132
+++ L+ +DA
Sbjct: 119 HDYAALRSKYDA 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,463,637
Number of extensions: 220038
Number of successful extensions: 1198
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1194
Number of HSP's successfully gapped: 13
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)