Os08g0481400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HAHB-7 (Fragment).
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Os08g0481400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HAHB-7 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.1 | 0.428 | 11.7 | 0.085 | 2.12 | 0.192 | 1.51 | 3.1 | 0.39 | 23.7 | 1001 | 87 | -- | -- |
| 83.77 | 0.426 | 11.7 | 0.262 | 2.1 | 0.735 | 1.58 | -- | 0.366 | 23.7 | 1001 | 86 | -- | -- |
| 90.47 | 0.446 | 11.7 | 0.074 | 2.11 | 0.359 | -- | 2.47 | 0.381 | 23.6 | 1002 | 59 | -- | -- |
| 94.06 | 0.452 | 11.7 | 0.234 | 2.11 | 0.741 | -- | -- | 0.379 | 23.6 | 1001 | 86 | -- | -- |
| 367.64 | 0.898 | 11.6 | 0.253 | -- | 0.761 | -- | 0.835 | 0.386 | -- | 1001 | 18 | -- | -- |
| 99.04 | 0.467 | 11.6 | 0.163 | 2.13 | -- | 1.58 | -- | 0.439 | 23.7 | -- | -- | -- | -- |
| 109.76 | 0.491 | 11.6 | 0.1 | 2.12 | -- | -- | -- | 0.433 | 23.7 | -- | -- | -- | -- |
| 368.07 | 0.897 | 11.6 | 0.3 | -- | 0.874 | -- | -- | 0.384 | -- | 1001 | 6 | -- | -- |
| 95.51 | 0.455 | 11.7 | -- | 2.1 | 0.735 | -- | -- | 0.359 | 23.6 | 1001 | 86 | -- | -- |
| 392.89 | 0.926 | 11.6 | 0.161 | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
| 110.03 | 0.491 | 11.6 | -- | 2.12 | -- | -- | -- | 0.422 | 23.7 | -- | -- | -- | -- |
| 370.39 | 0.899 | 11.6 | -- | -- | 0.836 | -- | -- | 0.354 | -- | 1001 | 6 | -- | -- |
| 393.57 | 0.926 | 11.6 | -- | -- | -- | -- | -- | 0.441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.19 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 1 | 17 |
| 2 | 75.53 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 9 | 76.55 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 10 | 76.63 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 2 | 16 |
| 13 | 76.84 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 2 | 16 |
| 19 | 77.11 | atmosphere | 1000 | 10 | > th | dose independent | sin | 23 | NA |
| 24 | 77.20 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 67 | 77.82 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 76 | 78.02 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 22 | NA |
| 79 | 78.06 | atmosphere | 1005 | 90 | < th | dose dependent | sin | 23 | NA |
| 86 | 78.16 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 91 | 78.22 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 100 | 78.27 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 114 | 78.41 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 119 | 78.45 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 128 | 78.49 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 145 | 78.60 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 15 |
| 169 | 78.73 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 3 |
| 185 | 78.90 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 194 | 78.95 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 199 | 78.98 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 204 | 79.03 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 252 | 79.27 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 7 | 11 |
| 274 | 79.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 293 | 79.49 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 299 | 79.51 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 17 |
| 315 | 79.58 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 6 | 19 |
| 396 | 79.89 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 1 | 22 |
| 409 | 79.92 | atmosphere | 1000 | 10 | < th | dose independent | sin | 22 | NA |
| 412 | 79.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 426 | 79.98 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 8 |
| 467 | 80.15 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 472 | 80.17 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 9 | 8 |
| 491 | 80.26 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 6 | 6 |
| 501 | 80.31 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 9 | 6 |
| 555 | 80.50 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 7 | 23 |
| 593 | 80.61 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 604 | 80.63 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 642 | 80.73 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 1 | 21 |
| 650 | 80.73 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 683 | 80.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 747 | 80.98 | atmosphere | 1015 | 720 | < th | dose dependent | sin | 2 | NA |