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Os04g0541700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.036) R2 : 0.865
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.22 (0.117) R2dC : 1.3 R2C : 0.612
β3 : -3.04 (0.13) R2dE : 0.253 R2E : -0.433
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0273 (0.0756) R2dN8 : 6.65e-05 R2N8 : -0.00464
σ : 0.674
deviance : 209.48
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_____
C
peak time of C : 5.68
E
wheather : humidity
threshold : 9.407
memory length : 335
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13
open length of G : 19.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.51 0.685 12.9 0.298 6.22 -2.62 1.29 -0.533 -0.00647 5.81 39.47 242 14.3 18.7
208.54 0.673 13 0.318 6.13 -2.84 0.945 -- -0.0799 5.77 27.98 304 13.4 19
207.69 0.671 13 0.305 6.09 -2.92 -- -0.17 0.0369 5.68 8.711 321 13.3 19
206.84 0.67 13 0.329 6.23 -3.07 -- -- 0.0121 5.67 8.918 328 13.1 19.3
724.63 1.26 13 0.354 -- -3.58 -- -0.577 0.222 -- -40.91 1736 13.1 7.95
282.87 0.788 13 0.274 4.9 -- 0.755 -- -0.0492 7.02 -- -- -- --
284.36 0.79 13 0.288 4.9 -- -- -- -0.0511 7.02 -- -- -- --
234.89 0.714 13.1 0.216 -- -5.73 -- -- -0.0158 -- -173.4 1902 10.6 9.17
209.48 0.674 13 -- 6.22 -3.04 -- -- -0.0273 5.68 9.407 335 13 19.3
1548.36 1.84 13.1 0.387 -- -- -- -- 0.0387 -- -- -- -- --
286.55 0.792 13 -- 4.9 -- -- -- -0.0832 7.01 -- -- -- --
236 0.715 13.1 -- -- -5.63 -- -- -0.0159 -- -180.3 1898 10.6 9.12
1552.31 1.84 13.1 -- -- -- -- -- -0.00424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.27 temperature 20.0 270 > th dose independent rect. 13 10
2 219.92 temperature 20.0 90 > th dose independent rect. 15 19
3 221.61 humidity 50.0 270 > th dose independent rect. 14 18
5 222.03 humidity 50.0 270 > th dose independent rect. 13 20
7 222.18 humidity 50.0 270 > th dose dependent rect. 14 18
11 223.00 temperature 20.0 10 > th dose independent rect. 16 18
21 225.06 atmosphere 1015.0 270 < th dose independent rect. 13 20
34 226.43 humidity 50.0 10 > th dose dependent rect. 15 20
39 227.03 radiation 1.0 270 > th dose independent rect. 9 5
48 227.85 temperature 10.0 270 > th dose dependent rect. 9 4
52 228.03 temperature 20.0 270 > th dose independent rect. 9 4
59 228.84 wind 9.0 270 < th dose independent rect. 13 20
63 229.10 precipitation 0.1 270 < th dose independent rect. 9 4
64 229.10 precipitation 0.1 270 < th dose dependent rect. 9 4
65 229.13 temperature 10.0 270 > th dose independent rect. 9 4
66 229.13 atmosphere 995.0 270 > th dose independent rect. 9 4
67 229.13 atmosphere 1015.0 270 < th dose independent rect. 9 4
75 229.50 temperature 10.0 270 > th dose dependent rect. 8 6
77 229.61 radiation 1.0 10 > th dose independent rect. 10 6
79 229.73 wind 9.0 270 < th dose independent rect. 9 4
89 230.34 radiation 40.0 270 < th dose independent rect. 14 18
104 230.90 radiation 40.0 270 < th dose independent rect. 13 20
111 231.37 wind 1.0 270 > th dose independent rect. 9 4
117 231.54 temperature 30.0 270 < th dose independent rect. 14 18
129 232.06 humidity 50.0 270 > th dose independent rect. 9 4
149 232.85 humidity 90.0 270 < th dose independent rect. 9 4
150 232.88 atmosphere 1010.0 270 < th dose independent rect. 13 9
154 233.14 humidity 80.0 10 < th dose independent rect. 10 6
166 233.58 precipitation 0.1 270 < th dose independent rect. 18 10
167 233.58 precipitation 0.1 270 < th dose dependent rect. 18 10
178 233.76 radiation 10.0 10 > th dose independent rect. 10 21
188 234.06 precipitation 0.1 270 < th dose independent rect. 9 18
189 234.06 precipitation 0.1 270 < th dose dependent rect. 9 18
191 234.14 radiation 10.0 10 > th dose independent rect. 10 8
214 234.32 atmosphere 995.0 270 > th dose independent rect. 13 20
231 234.74 temperature 30.0 90 < th dose dependent rect. 21 8
232 234.76 temperature 10.0 10 > th dose dependent rect. 10 6
242 235.10 atmosphere 1015.0 10 < th dose independent rect. 16 18
254 235.40 wind 1.0 270 > th dose independent rect. 9 17
313 236.26 precipitation 0.1 270 < th dose independent rect. 22 15
316 236.26 precipitation 0.1 270 < th dose dependent rect. 22 15
324 236.33 precipitation 0.1 270 < th dose independent rect. 8 20
325 236.33 precipitation 0.1 270 < th dose dependent rect. 8 20
343 236.71 wind 9.0 270 < th dose independent rect. 4 15
362 237.04 humidity 50.0 270 > th dose independent rect. 13 8
374 237.17 wind 7.0 270 < th dose independent rect. 19 9
392 237.36 radiation 20.0 10 < th dose dependent sin 19 NA
393 237.38 temperature 10.0 270 > th dose independent rect. 19 9
394 237.38 temperature 30.0 270 < th dose independent rect. 19 9
395 237.38 humidity 50.0 270 > th dose independent rect. 19 9
396 237.38 atmosphere 995.0 270 > th dose independent rect. 19 9
397 237.38 radiation 1.0 270 < th dose independent rect. 19 9
402 237.38 temperature 10.0 270 > th dose independent rect. 4 15
403 237.38 atmosphere 1015.0 270 < th dose independent rect. 4 15
404 237.38 radiation 1.0 270 < th dose dependent rect. 19 9
432 237.68 temperature 20.0 10 > th dose independent rect. 10 6
450 237.90 radiation 10.0 10 > th dose independent sin 19 NA
467 238.15 humidity 60.0 270 > th dose independent rect. 3 6
469 238.18 precipitation 0.1 270 < th dose independent rect. 7 22
470 238.18 precipitation 0.1 270 < th dose dependent rect. 7 22
498 238.49 wind 9.0 270 < th dose independent rect. 3 6
499 238.49 temperature 10.0 270 > th dose independent rect. 3 6
502 238.49 atmosphere 995.0 270 > th dose independent rect. 3 6
503 238.49 atmosphere 1015.0 270 < th dose independent rect. 3 6
504 238.49 temperature 10.0 270 > th dose independent rect. 9 18
505 238.49 precipitation 0.1 270 < th dose independent rect. 14 19
507 238.49 precipitation 0.1 270 < th dose dependent rect. 14 19
514 238.58 temperature 30.0 270 < th dose independent rect. 3 6
528 238.68 temperature 10.0 270 > th dose independent rect. 22 15
529 238.68 atmosphere 995.0 270 > th dose independent rect. 22 15
534 238.74 wind 9.0 270 < th dose independent rect. 13 9
557 239.01 wind 1.0 270 > th dose independent rect. 19 9
560 239.03 humidity 50.0 270 > th dose dependent rect. 3 6
585 239.29 wind 1.0 270 > th dose independent rect. 13 9
596 239.46 humidity 50.0 270 > th dose independent rect. 4 15
598 239.47 radiation 40.0 270 < th dose independent rect. 3 6
607 239.58 wind 9.0 270 < th dose independent rect. 22 15
608 239.59 humidity 50.0 270 > th dose independent rect. 14 5
629 239.68 wind 9.0 270 < th dose independent rect. 9 18
680 240.10 atmosphere 995.0 10 > th dose independent rect. 10 6
752 240.58 wind 1.0 270 > th dose independent rect. 8 20
753 240.59 temperature 10.0 10 > th dose independent rect. 10 6
755 240.59 atmosphere 1015.0 10 < th dose independent rect. 10 6
756 240.59 precipitation 0.1 10 < th dose independent rect. 10 6
759 240.59 precipitation 0.1 10 < th dose dependent rect. 10 6
786 240.75 precipitation 0.1 270 < th dose independent rect. 3 6
787 240.75 precipitation 0.1 270 < th dose dependent rect. 3 6
798 240.90 wind 9.0 10 < th dose independent rect. 16 18
809 241.02 humidity 80.0 270 < th dose independent rect. 19 19
819 241.14 wind 9.0 270 < th dose dependent rect. 9 4
835 241.23 wind 9.0 10 < th dose independent rect. 10 6
843 241.28 humidity 90.0 270 < th dose dependent rect. 19 19
854 241.34 humidity 90.0 270 < th dose independent rect. 9 17
869 241.40 temperature 10.0 10 > th dose dependent rect. 16 18
926 241.80 atmosphere 995.0 10 > th dose independent rect. 16 18
956 241.97 atmosphere 995.0 270 > th dose independent rect. 9 18
964 242.00 temperature 10.0 1440 > th dose independent rect. 11 6
968 242.00 temperature 10.0 1440 > th dose independent rect. 17 18