FiT-DB / Search/ Help/ Sample detail

Os08g0416000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain leucine zipper protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0246) R2 : 0.64
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.67 (0.0591) R2dC : 0.631 R2C : 0.631
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.156 (0.0518) R2dN8 : 0.00924 R2N8 : 0.0092
σ : 0.464
deviance : 98.52
__
_____
C
peak time of C : 1.29
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.6 0.442 11.4 0.0183 1.85 0.729 0.0149 0.114 0.163 0.526 78 797 -- --
88.62 0.438 11.3 0.0234 1.85 0.732 -0.0179 -- 0.164 0.525 78 796 -- --
88.6 0.438 11.3 0.0186 1.85 0.729 -- 0.106 0.163 0.527 77.96 797 -- --
88.62 0.438 11.3 0.0234 1.85 0.732 -- -- 0.164 0.525 78 796 -- --
158.17 0.589 11.3 0.102 -- 1 -- 0.439 0.146 -- 78.12 1682 -- --
98.47 0.465 11.3 -0.0402 1.67 -- -0.0559 -- 0.151 1.29 -- -- -- --
98.48 0.465 11.3 -0.0382 1.67 -- -- -- 0.152 1.29 -- -- -- --
159.4 0.591 11.3 0.115 -- 1 -- -- 0.149 -- 78.12 1682 -- --
88.64 0.438 11.3 -- 1.85 0.729 -- -- 0.161 0.526 77.97 796 -- --
271.17 0.769 11.3 0.027 -- -- -- -- 0.186 -- -- -- -- --
98.52 0.464 11.3 -- 1.67 -- -- -- 0.156 1.29 -- -- -- --
159.75 0.591 11.3 -- -- 1 -- -- 0.137 -- 78.12 1682 -- --
271.19 0.769 11.3 -- -- -- -- -- 0.183 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.40 humidity 80.0 720 > th dose independent rect. 11 11
4 85.59 humidity 70.0 720 > th dose dependent rect. 19 1
19 86.55 humidity 80.0 720 > th dose independent sin 19 NA
26 86.66 humidity 80.0 720 > th dose independent rect. 18 2
39 86.99 humidity 80.0 720 < th dose independent rect. 13 13
43 87.03 humidity 80.0 720 > th dose dependent rect. 9 14
46 87.11 humidity 70.0 720 > th dose dependent rect. 11 11
52 87.16 humidity 80.0 720 < th dose independent sin 16 NA
64 87.29 humidity 70.0 720 > th dose dependent rect. 15 7
66 87.32 humidity 80.0 720 > th dose independent rect. 10 19
68 87.33 humidity 80.0 720 < th dose independent rect. 15 10
78 87.35 humidity 80.0 720 < th dose independent rect. 11 16
88 87.41 humidity 80.0 720 < th dose independent rect. 13 9
96 87.45 humidity 80.0 720 < th dose independent rect. 13 18
108 87.51 radiation 1.0 14400 < th dose dependent rect. 20 1
128 87.60 humidity 80.0 720 < th dose independent rect. 11 20
140 87.66 humidity 80.0 720 > th dose independent rect. 1 21
145 87.69 humidity 70.0 720 > th dose dependent sin 19 NA
173 87.84 humidity 80.0 720 < th dose independent rect. 9 18
194 87.92 humidity 80.0 720 < th dose independent rect. 9 22
219 88.00 humidity 80.0 720 > th dose independent rect. 3 19
257 88.18 humidity 90.0 720 < th dose dependent rect. 19 5
317 88.46 precipitation 0.1 14400 > th dose independent rect. 17 1
329 88.50 humidity 80.0 14400 > th dose dependent rect. 14 1
338 88.52 humidity 80.0 14400 > th dose dependent rect. 13 3
384 88.70 precipitation 0.1 14400 < th dose independent rect. 17 1
385 88.70 precipitation 0.1 14400 < th dose dependent rect. 17 1
395 88.73 humidity 90.0 720 < th dose dependent rect. 18 14
407 88.78 atmosphere 1005.0 270 > th dose independent rect. 15 10
414 88.79 humidity 80.0 720 < th dose independent rect. 23 23
421 88.81 humidity 90.0 720 < th dose dependent rect. 18 10
447 88.89 humidity 90.0 720 < th dose dependent rect. 20 1
455 88.92 humidity 80.0 720 > th dose independent no NA NA
460 88.93 precipitation 0.1 14400 > th dose independent rect. 14 1
462 88.93 precipitation 0.1 14400 > th dose dependent rect. 14 1
473 88.97 humidity 80.0 720 > th dose independent rect. 13 23
474 88.98 humidity 80.0 720 < th dose independent rect. 6 21
484 89.01 humidity 80.0 720 > th dose independent rect. 3 23
503 89.04 humidity 50.0 720 > th dose dependent rect. 17 12
505 89.05 precipitation 0.1 14400 < th dose independent rect. 14 1
509 89.05 precipitation 0.1 14400 < th dose dependent rect. 14 1
512 89.06 precipitation 0.1 14400 < th dose independent rect. 12 4
517 89.06 precipitation 0.1 14400 < th dose dependent rect. 12 4
523 89.08 humidity 80.0 720 < th dose independent no NA NA
532 89.10 humidity 80.0 720 > th dose independent rect. 15 23
535 89.11 temperature 25.0 720 < th dose independent rect. 1 7
540 89.12 temperature 25.0 720 < th dose independent rect. 24 9
556 89.13 humidity 70.0 720 > th dose dependent rect. 13 16
568 89.15 humidity 80.0 720 > th dose independent rect. 21 23
573 89.16 precipitation 0.1 14400 > th dose independent rect. 12 4
581 89.18 humidity 90.0 4320 < th dose independent rect. 13 1
586 89.19 temperature 20.0 720 > th dose independent rect. 3 21
600 89.23 wind 9.0 4320 < th dose independent rect. 18 3
603 89.23 temperature 20.0 720 > th dose independent rect. 1 23
604 89.23 humidity 80.0 720 < th dose independent rect. 18 23
605 89.23 wind 9.0 4320 > th dose dependent rect. 18 3
614 89.24 humidity 80.0 720 > th dose independent rect. 18 23
621 89.26 temperature 20.0 720 > th dose independent rect. 1 21
631 89.27 temperature 20.0 720 > th dose independent rect. 8 23
636 89.28 humidity 80.0 720 < th dose independent rect. 15 23
648 89.32 humidity 80.0 14400 > th dose independent rect. 15 1
666 89.36 precipitation 0.1 14400 < th dose independent rect. 10 6
669 89.36 precipitation 0.1 14400 < th dose dependent rect. 10 6
675 89.37 radiation 10.0 1440 < th dose dependent rect. 23 6
679 89.38 humidity 50.0 720 > th dose dependent rect. 17 9
696 89.42 humidity 90.0 4320 > th dose independent rect. 13 1
697 89.42 wind 9.0 4320 > th dose independent rect. 18 3
698 89.42 precipitation 0.1 14400 > th dose dependent rect. 17 1
715 89.46 precipitation 0.1 14400 > th dose independent rect. 9 7
726 89.47 temperature 20.0 720 > th dose independent rect. 10 21
736 89.48 humidity 90.0 720 < th dose dependent sin 12 NA
739 89.49 temperature 20.0 720 > th dose independent rect. 10 23
740 89.49 temperature 20.0 720 > th dose independent rect. 23 23
753 89.52 temperature 20.0 720 > th dose independent rect. 17 16
755 89.52 temperature 20.0 720 < th dose independent rect. 3 21
761 89.53 temperature 20.0 720 > th dose independent rect. 21 23
763 89.53 radiation 1.0 720 < th dose dependent rect. 10 7
767 89.54 temperature 20.0 720 > th dose independent rect. 17 14
772 89.54 temperature 30.0 720 < th dose dependent rect. 23 9
773 89.54 humidity 70.0 720 > th dose dependent rect. 3 19
774 89.55 humidity 80.0 1440 < th dose independent rect. 23 15
783 89.56 temperature 20.0 720 > th dose independent rect. 14 23
809 89.61 temperature 20.0 720 < th dose independent rect. 12 19
821 89.63 temperature 20.0 720 > th dose independent rect. 17 23
826 89.64 temperature 20.0 720 > th dose independent rect. 18 19
829 89.64 temperature 20.0 720 < th dose independent rect. 8 23
833 89.65 temperature 20.0 720 > th dose independent no NA NA
835 89.65 temperature 20.0 270 > th dose independent rect. 4 16
855 89.67 precipitation 0.1 14400 > th dose dependent rect. 9 7
919 89.74 temperature 20.0 720 < th dose independent rect. 18 22
950 89.77 humidity 70.0 720 > th dose dependent rect. 1 22
951 89.78 temperature 20.0 720 < th dose independent no NA NA
953 89.78 humidity 80.0 1440 < th dose independent sin 5 NA
979 89.80 radiation 10.0 1440 < th dose dependent rect. 21 8
989 89.81 temperature 20.0 720 < th dose independent rect. 15 23
1000 89.82 temperature 20.0 720 > th dose dependent rect. 1 6