BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0416000 Os08g0416000|AF145729
(349 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0416000 Homeodomain leucine zipper protein 410 e-114
Os02g0729700 Similar to HAHB-7 (Fragment) 166 3e-41
Os09g0379600 Homeodomain-like containing protein 137 1e-32
Os10g0404900 Similar to HAHB-5 (Fragment) 115 5e-26
Os09g0470500 Homeodomain leucine zipper protein 114 8e-26
Os08g0481400 Similar to HAHB-7 (Fragment) 114 1e-25
Os03g0188900 Similar to HAHB-7 (Fragment) 109 3e-24
Os07g0581700 Similar to HAHB-7 (Fragment) 89 5e-18
Os02g0649300 Similar to Short highly repeated, interspersed... 88 9e-18
Os04g0541700 Homeodomain-like containing protein 87 1e-17
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 87 3e-17
Os03g0198600 Similar to HAHB-7 (Fragment) 81 1e-15
Os02g0565600 Similar to Homeodomain leucine zipper protein ... 76 3e-14
AY346328 75 5e-14
Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza... 74 1e-13
Os02g0149900 72 8e-13
Os06g0140700 Similar to Homeodomain leucine zipper protein ... 70 2e-12
Os04g0548700 Homeodomain-like containing protein 69 4e-12
Os06g0140400 Similar to HAHB-6 (Fragment) 69 7e-12
Os06g0698200 68 1e-11
Os01g0643600 Homeobox domain containing protein 66 3e-11
Os09g0447000 Homeobox domain containing protein 65 6e-11
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 410 bits (1053), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/349 (63%), Positives = 221/349 (63%)
Query: 1 MDPGRVVFDSGVARRACPXXXXXXXXXXXXXXXXXXXXXXVPAAVLGMDESRXXXXXXXX 60
MDPGRVVFDSGVARRACP VPAAVLGMDESR
Sbjct: 1 MDPGRVVFDSGVARRACPGGAQMLLFGGGGSANSGGFFRGVPAAVLGMDESRSSSSAAGA 60
Query: 61 XXKRPFFTTHXXXXXXXXXXXQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRL 120
KRPFFTTH QAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRL
Sbjct: 61 GAKRPFFTTHEELLEEEYYDEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRL 120
Query: 121 GMAPRQVAVWFQNRRARWKTKQLEHDFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISLTE 180
GMAPRQVAVWFQNRRARWKTKQLEHDFDRLK SDNDRLRAQVISLTE
Sbjct: 121 GMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTE 180
Query: 181 KLQDKEXXXXXXXXXXXXQEVDQPDEHTEAASTTGFATVDXXXXXXXXXXXXXXXKDDLX 240
KLQDKE QEVDQPDEHTEAASTTGFATVD KDDL
Sbjct: 181 KLQDKETSPSSATITTAAQEVDQPDEHTEAASTTGFATVDGALAAPPPGHQQPPHKDDLV 240
Query: 241 XXXXXXXXXXXXXXXXXXXXXEGANDRLSCESAYFADAAEAYERDCAGHYALSSEEEDGG 300
EGANDRLSCESAYFADAAEAYERDCAGHYALSSEEEDGG
Sbjct: 241 SSGGTNDDGDGGAAVVVFDVTEGANDRLSCESAYFADAAEAYERDCAGHYALSSEEEDGG 300
Query: 301 AVSDEGCSFDLPDXXXXXXXXXXXXXXXXXXXXXXEEAQLGSWTAWFWS 349
AVSDEGCSFDLPD EEAQLGSWTAWFWS
Sbjct: 301 AVSDEGCSFDLPDAAAAAAAMFGAAGVVHHDAADDEEAQLGSWTAWFWS 349
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 96/142 (67%), Gaps = 7/142 (4%)
Query: 45 VLGMDESRXXXXXXXXXXKRPFFTTHXXXXXXXXXXXQAPEKKRRLTAEQVQMLERSFEE 104
VLGM+E KRPFFTT Q PEKKRRLT EQV +LERSFEE
Sbjct: 43 VLGMEEG-------GRGVKRPFFTTPDELLEEEYYDEQLPEKKRRLTPEQVHLLERSFEE 95
Query: 105 ENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKXXXXXXXXXXXXX 164
ENKLEPERKTELAR+LG+ PRQVAVWFQNRRARWKTKQLE DFDRLK
Sbjct: 96 ENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDAL 155
Query: 165 XSDNDRLRAQVISLTEKLQDKE 186
DN RL +QV+SLTEKLQ+KE
Sbjct: 156 LQDNHRLHSQVMSLTEKLQEKE 177
>Os09g0379600 Homeodomain-like containing protein
Length = 286
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
Query: 83 APEKKRRLTAEQVQMLERSFEEEN-KLEPERKTELARRLGMAPRQVAVWFQNRRARWKTK 141
A +KRRLTAEQV+ LERSFEEE KLEPERK+ELARRLG+APRQVAVWFQNRRARWKTK
Sbjct: 45 AAARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTK 104
Query: 142 QLEHDFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISLTEKLQ 183
QLE DFDRL+ +DN+ LR+QVI LTEKLQ
Sbjct: 105 QLELDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEKLQ 146
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 67/93 (72%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KKRRL+ EQV+ LERSFE NKLEPERK +LAR LG+ PRQVA+WFQNRRARWKTKQLE
Sbjct: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
Query: 146 DFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISL 178
DFD L+ S N +L A++++L
Sbjct: 164 DFDALRRQLDAARAENDALLSLNSKLHAEIVAL 196
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 69/102 (67%)
Query: 85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLE 144
EKKRRL+ EQV+ LERSFE ENKLEPERK LAR LG+ PRQVAVWFQNRRARWKTKQLE
Sbjct: 50 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 109
Query: 145 HDFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISLTEKLQDKE 186
D+ L+ D D L A++ L KL D+E
Sbjct: 110 RDYAALRHSYDSLRLDHDALRRDKDALLAEIKELKAKLGDEE 151
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 69/102 (67%)
Query: 85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLE 144
EKKRRL+ EQV+ LERSFE ENKLEPERK LAR LG+ PRQVAVWFQNRRARWKTKQLE
Sbjct: 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLE 101
Query: 145 HDFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISLTEKLQDKE 186
D+ L+ D D L A++ L KL D++
Sbjct: 102 RDYAALRQSYDALRADHDALRRDKDALLAEIKELKGKLGDED 143
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/101 (56%), Positives = 67/101 (66%)
Query: 85 EKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLE 144
EKKRRL EQV+ LERSF+ +NKL+P+RK +AR LG+ PRQVAVWFQNRRARWKTKQLE
Sbjct: 71 EKKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLE 130
Query: 145 HDFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISLTEKLQDK 185
DF L+ D D L A++ L EKL K
Sbjct: 131 RDFAALRARHDALRADCDALRRDKDALAAEIRELREKLPTK 171
>Os07g0581700 Similar to HAHB-7 (Fragment)
Length = 240
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 51/66 (77%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KKRRL+ EQV+MLE SF EE KLE RK LA LG+ P+QVAVWFQNRRAR K+K LE
Sbjct: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
Query: 146 DFDRLK 151
+F +LK
Sbjct: 122 EFSKLK 127
>Os02g0649300 Similar to Short highly repeated, interspersed DNA (Fragment)
Length = 261
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 85 EKKRRLTAEQVQMLERSFEEEN-KLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQL 143
E+KRR T EQV+ LE +F KLEP K ELAR LG+ PRQVA+WFQN+RARW++KQ+
Sbjct: 63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQI 122
Query: 144 EHDFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISLTEKLQDKE 186
EHD+ L+ + L QV L KL +++
Sbjct: 123 EHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQ 165
>Os04g0541700 Homeodomain-like containing protein
Length = 262
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 85 EKKRRLTAEQVQMLERSFEEEN-KLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQL 143
E+KRR T EQ++ LE F + KLEP K ELAR LG+ PRQVA+WFQN+RARW++KQL
Sbjct: 58 ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQL 117
Query: 144 EHDFDRLK 151
EHD+ L+
Sbjct: 118 EHDYAALR 125
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 62/102 (60%)
Query: 83 APEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQ 142
A ++K+R + EQ++ LE F + KLEP +K +LAR LG+ PRQVA+WFQN+RARWK+KQ
Sbjct: 49 AADRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQ 108
Query: 143 LEHDFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISLTEKLQD 184
LE ++ L+ + L Q+ L E LQ+
Sbjct: 109 LEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQE 150
>Os03g0198600 Similar to HAHB-7 (Fragment)
Length = 239
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 7/101 (6%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KKRRL+ EQ + LE SF++E KLE RK +LA LG+ +QVAVWFQNRRAR K+K +E
Sbjct: 61 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEE 120
Query: 146 DFDRLKXXXXXXXXXXXXXXSDNDRLRAQVISLTEKLQDKE 186
+F +L+ N L +++ L E+L D E
Sbjct: 121 EFAKLRSAHDAVVL-------QNCHLETELLKLKERLADVE 154
>Os02g0565600 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 349
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 47/66 (71%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KK RL+ EQ LE SF+E + L P++K++LA RL + PRQV VWFQNRRAR K KQ E
Sbjct: 153 KKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEV 212
Query: 146 DFDRLK 151
D + LK
Sbjct: 213 DCEHLK 218
>AY346328
Length = 292
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 47/66 (71%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KK RL+ EQ LE SF+E + L P++K++LA RL + PRQV VWFQNRRAR K KQ E
Sbjct: 96 KKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEV 155
Query: 146 DFDRLK 151
D + LK
Sbjct: 156 DCEHLK 161
>Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KK RL+ +Q +LE +F+E N L P++K LAR+L + PRQV VWFQNRRAR K KQ E
Sbjct: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
Query: 146 DFDRLK 151
D + LK
Sbjct: 217 DCELLK 222
>Os02g0149900
Length = 248
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 44/69 (63%)
Query: 83 APEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQ 142
A KK RLT EQ +LE SF N L K ELA +LG++ RQV VWFQNRRAR K KQ
Sbjct: 114 ASRKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQ 173
Query: 143 LEHDFDRLK 151
E D D L+
Sbjct: 174 TEADCDLLR 182
>Os06g0140700 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 308
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KK RL+ +Q +LE F+ + L P++K LA RLG+ PRQV VWFQNRRAR K KQ E
Sbjct: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
Query: 146 DFDRLK 151
D + LK
Sbjct: 175 DCEYLK 180
>Os04g0548700 Homeodomain-like containing protein
Length = 247
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 45/66 (68%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KK RL+ +Q +LE SF E L P +K LA++LG+ PRQV VWFQNRRAR K KQ E
Sbjct: 82 KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEV 141
Query: 146 DFDRLK 151
D + LK
Sbjct: 142 DCEFLK 147
>Os06g0140400 Similar to HAHB-6 (Fragment)
Length = 256
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KK RL+ +Q +LE F+ + L P++K LA+ L + PRQV VWFQNRRAR K KQ E
Sbjct: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
Query: 146 DFDRLK 151
D + LK
Sbjct: 154 DCEHLK 159
>Os06g0698200
Length = 256
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 44/66 (66%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KK +LT EQ +LE SF N L +K ELAR+L + PRQV VWFQNRRAR K KQ E
Sbjct: 115 KKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEV 174
Query: 146 DFDRLK 151
D + LK
Sbjct: 175 DCEFLK 180
>Os01g0643600 Homeobox domain containing protein
Length = 229
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%)
Query: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
KK RL+ EQ ++LE SF + L P++K LA +L + PRQV VWFQNRRAR K KQ E
Sbjct: 78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEM 137
Query: 146 DFDRLK 151
+ + LK
Sbjct: 138 ECEYLK 143
>Os09g0447000 Homeobox domain containing protein
Length = 90
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%)
Query: 90 LTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDR 149
L+ EQ LE SF+E + L P++K LA++L + PRQV VWFQNRRAR K KQ E D +
Sbjct: 1 LSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEY 60
Query: 150 LK 151
LK
Sbjct: 61 LK 62
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,541,768
Number of extensions: 207556
Number of successful extensions: 485
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 22
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 156 (64.7 bits)