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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0404900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to HAHB-5 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.68 (0.0547) R2 : 0.669
β1 : -4.81 (0.318) R2dD : 0.649 R2D : -0.0964
β2 : 1.63 (0.118) R2dC : 0.145 R2C : 0.203
β3 : 3.13 (0.176) R2dE : 0.367 R2E : 0.196
β4 : -3.25 (0.51) R2dD*C : 0.0298 R2D*C : 0.027
β5 : -9.89 (1.08) R2dD*E : 0.232 R2D*E : -0.404
γ1 : -0.246 (0.125) R2dN8 : 0.00647 R2N8 : -0.0528
σ : 0.846
deviance : 324.33
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_____
C
peak time of C : 7.44
E
wheather : temperature
threshold : 22.28
memory length : 1069
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.86
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
324.33 0.846 4.68 -4.81 1.63 3.13 -3.25 -9.89 -0.246 7.44 22.28 1069 8.86 --
374.52 0.901 4.42 -2.47 1.35 2.82 -3.16 -- 0.386 7.98 18.01 921 8.48 --
351.24 0.873 4.68 -4.82 1.67 2.93 -- -9.36 -0.22 6.96 21.86 1126 9.24 --
397.56 0.929 4.41 -2.59 1.89 3.24 -- -- 0.428 8.6 16.16 976 11 --
371.2 0.897 4.56 -3.86 -- 3.8 -- -7.59 0.102 -- 11.58 859 6.31 --
511.56 1.06 4.31 -1.82 2.26 -- -3.06 -- 0.846 6.15 -- -- -- --
534.1 1.08 4.3 -1.85 2.25 -- -- -- 0.856 6 -- -- -- --
413.59 0.947 4.46 -2.62 -- 4.11 -- -- 0.387 -- -2.355 1158 9.23 --
556.77 1.1 4.3 -- 2.21 2.12 -- -- 0.885 7.75 20.23 655 8.61 --
796.56 1.32 4.34 -1.79 -- -- -- -- 0.907 -- -- -- -- --
624.43 1.17 4.26 -- 2.22 -- -- -- 1.06 6.04 -- -- -- --
572.61 1.11 4.36 -- -- 3.15 -- -- 0.807 -- 3.018 886 6.98 --
880.65 1.39 4.3 -- -- -- -- -- 1.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 316.37 radiation 40 43200 > th dose independent rect. 10 1
2 317.79 radiation 40 43200 < th dose independent rect. 9 2
5 319.59 wind 5 43200 > th dose dependent rect. 14 2
7 319.90 radiation 40 43200 > th dose dependent rect. 10 2
10 320.46 radiation 20 43200 < th dose independent rect. 8 1
39 321.89 radiation 40 43200 > th dose independent rect. 7 4
61 322.63 radiation 40 43200 < th dose independent rect. 4 8
63 322.63 radiation 40 43200 < th dose independent rect. 17 19
68 322.65 radiation 40 43200 < th dose independent rect. 20 16
72 322.66 radiation 40 43200 < th dose independent rect. 22 14
82 322.91 radiation 20 43200 < th dose independent rect. 4 5
85 322.92 radiation 20 43200 < th dose independent rect. 18 15
89 322.94 radiation 20 43200 < th dose independent rect. 20 13
91 322.95 radiation 20 43200 < th dose independent rect. 22 11
219 324.44 radiation 40 43200 > th dose dependent sin 9 NA
244 325.22 wind 5 43200 > th dose independent rect. 11 5
248 325.56 radiation 20 43200 > th dose independent rect. 8 1
250 325.61 radiation 20 43200 > th dose independent rect. 6 3
297 325.70 wind 5 43200 < th dose independent rect. 11 5
300 325.74 radiation 40 43200 < th dose independent sin 8 NA
362 326.60 wind 5 43200 < th dose independent rect. 10 7
382 327.17 radiation 40 43200 > th dose independent sin 10 NA
399 327.37 wind 3 43200 > th dose dependent rect. 10 7
423 327.62 radiation 20 43200 < th dose independent sin 10 NA
459 327.84 radiation 1 14400 < th dose dependent rect. 4 1
461 327.85 wind 5 43200 > th dose dependent rect. 10 9
462 327.89 radiation 1 14400 < th dose dependent rect. 2 3
587 329.35 wind 5 43200 > th dose independent rect. 11 11
724 330.17 wind 5 43200 < th dose independent rect. 11 11
761 330.51 radiation 40 43200 > th dose dependent rect. 9 23
836 330.76 wind 7 43200 < th dose independent rect. 14 2
866 331.06 radiation 40 43200 > th dose dependent no NA NA