BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0404900 Os10g0404900|Os10g0404900
(351 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0404900 Similar to HAHB-5 (Fragment) 335 3e-92
Os08g0416000 Homeodomain leucine zipper protein 121 6e-28
Os02g0729700 Similar to HAHB-7 (Fragment) 121 6e-28
Os08g0481400 Similar to HAHB-7 (Fragment) 121 9e-28
Os09g0470500 Homeodomain leucine zipper protein 118 6e-27
Os03g0188900 Similar to HAHB-7 (Fragment) 114 1e-25
Os09g0379600 Homeodomain-like containing protein 101 8e-22
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 92 6e-19
Os04g0541700 Homeodomain-like containing protein 87 2e-17
Os02g0649300 Similar to Short highly repeated, interspersed... 87 2e-17
Os03g0198600 Similar to HAHB-7 (Fragment) 80 2e-15
Os07g0581700 Similar to HAHB-7 (Fragment) 78 1e-14
Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza... 70 2e-12
Os06g0140400 Similar to HAHB-6 (Fragment) 68 9e-12
Os04g0548700 Homeodomain-like containing protein 68 1e-11
Os02g0565600 Similar to Homeodomain leucine zipper protein ... 66 3e-11
Os06g0140700 Similar to Homeodomain leucine zipper protein ... 66 3e-11
AY346328 66 5e-11
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 335 bits (858), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/248 (70%), Positives = 176/248 (70%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK
Sbjct: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVALKXXXXXXXXXXSSCRQEAASELINLNV 223
DF ENDALLSLNSKLHAEIVALK SSCRQEAASELINLNV
Sbjct: 164 DFDALRRQLDAARAENDALLSLNSKLHAEIVALKGGAAAAGGGGSSCRQEAASELINLNV 223
Query: 224 KETEASCSNRSENSSEINLDISRXXXXXXXXXXNESPVNRGIPFYASIGRGGAGGVDIDQ 283
KETEASCSNRSENSSEINLDISR NESPVNRGIPFYASIGRGGAGGVDIDQ
Sbjct: 224 KETEASCSNRSENSSEINLDISRPAPPPPPPPANESPVNRGIPFYASIGRGGAGGVDIDQ 283
Query: 284 LLLRGGHXXXXXXXXXXXXXKMEXXXXXXXXXXXXXXXXXXXXXXXXXXXVDEQPPFWPW 343
LLLRGGH KME VDEQPPFWPW
Sbjct: 284 LLLRGGHSPSPAAVTTPPPPKMELGITGNGGGADAAAAGAGSFGGLLCGAVDEQPPFWPW 343
Query: 344 ADGHHHFH 351
ADGHHHFH
Sbjct: 344 ADGHHHFH 351
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 82/129 (63%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KKRRL+ EQV+ LERSFE NKLEPERK +LAR LG+ PRQVA+WFQNRRARWKTKQLE
Sbjct: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVALKXXXXXXXXXXSSCRQEAASELINLNV 223
DF ++ ALLS N +L A++++L SS A++ ++
Sbjct: 146 DFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKETSPSSATITTAAQEVDQPD 205
Query: 224 KETEASCSN 232
+ TEA+ +
Sbjct: 206 EHTEAASTT 214
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 71/93 (76%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KKRRL+ EQV LERSFE NKLEPERK +LAR LGLQPRQVA+WFQNRRARWKTKQLE+
Sbjct: 77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLER 136
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVAL 196
DF ++DALL N +LH+++++L
Sbjct: 137 DFDRLKASFDALRADHDALLQDNHRLHSQVMSL 169
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 121 bits (303), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 70/94 (74%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KKRRLSVEQVR LERSFE+ NKLEPERKA+LAR LGLQPRQVA+WFQNRRARWKTKQLE+
Sbjct: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVALK 197
D+ ++DAL L AEI LK
Sbjct: 103 DYAALRQSYDALRADHDALRRDKDALLAEIKELK 136
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 69/94 (73%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KKRRLSVEQVR LERSFE NKLEPERKA+LAR LGLQPRQVA+WFQNRRARWKTKQLE+
Sbjct: 51 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 110
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVALK 197
D+ ++DAL L AEI LK
Sbjct: 111 DYAALRHSYDSLRLDHDALRRDKDALLAEIKELK 144
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 69/94 (73%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KKRRL++EQVR LERSF++ NKL+P+RKA++AR LGLQPRQVA+WFQNRRARWKTKQLE+
Sbjct: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLER 131
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVALK 197
DF + DAL L AEI L+
Sbjct: 132 DFAALRARHDALRADCDALRRDKDALAAEIRELR 165
>Os09g0379600 Homeodomain-like containing protein
Length = 286
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 104 KKRRLSVEQVRTLERSFES-GNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLE 162
+KRRL+ EQVR LERSFE KLEPERK++LAR LG+ PRQVA+WFQNRRARWKTKQLE
Sbjct: 48 RKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLE 107
Query: 163 KDFXXXXXXXXXXXXENDALLSLNSKLHAEIVAL 196
DF AL + N L ++++ L
Sbjct: 108 LDFDRLRAAHDELLAGRTALAADNESLRSQVILL 141
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 62/93 (66%), Gaps = 7/93 (7%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
+K+R S EQ+++LE F + KLEP +K QLAR LGLQPRQVAIWFQN+RARWK+KQLE+
Sbjct: 52 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLER 111
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVAL 196
++ + DALL L E +AL
Sbjct: 112 EY-------SALRDDYDALLCSYESLKKEKLAL 137
>Os04g0541700 Homeodomain-like containing protein
Length = 262
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 15/95 (15%)
Query: 104 KKRRLSVEQVRTLERSFESGN-KLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLE 162
+KRR + EQ+R+LE F + + KLEP KA+LAR LGLQPRQVAIWFQN+RARW++KQLE
Sbjct: 59 RKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLE 118
Query: 163 KDFXXXXXXXXXXXXENDALLSLNSKLHAEIVALK 197
D+ AL S LH+ + +LK
Sbjct: 119 HDYA--------------ALRSKYDALHSRVESLK 139
>Os02g0649300 Similar to Short highly repeated, interspersed DNA (Fragment)
Length = 261
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Query: 104 KKRRLSVEQVRTLERSFESGN-KLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLE 162
+KRR + EQVR+LE +F + KLEP KA+LAR LGLQPRQVAIWFQN+RARW++KQ+E
Sbjct: 64 RKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIE 123
Query: 163 KDF 165
D+
Sbjct: 124 HDY 126
>Os03g0198600 Similar to HAHB-7 (Fragment)
Length = 239
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 7/94 (7%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KKRRLS EQ R LE SF+ KLE RK QLA LGL +QVA+WFQNRRAR K+K +E+
Sbjct: 61 KKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEE 120
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVALK 197
+F +DA++ N L E++ LK
Sbjct: 121 EFAKLRSA-------HDAVVLQNCHLETELLKLK 147
>Os07g0581700 Similar to HAHB-7 (Fragment)
Length = 240
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 45/62 (72%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KKRRLS EQV LE SF KLE RK LA LGL P+QVA+WFQNRRAR K+K LE+
Sbjct: 62 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEE 121
Query: 164 DF 165
+F
Sbjct: 122 EF 123
>Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 43/61 (70%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KK RLS +Q LE +F+ N L P++KA LAR L L+PRQV +WFQNRRAR K KQ E
Sbjct: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
Query: 164 D 164
D
Sbjct: 217 D 217
>Os06g0140400 Similar to HAHB-6 (Fragment)
Length = 256
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KK RLS +Q LE F++ + L P++K LA++L L+PRQV +WFQNRRAR K KQ E
Sbjct: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
Query: 164 DFXXXXXXXXXXXXENDALLSLNSKLHAEIVALK 197
D D L N +LH E+ L+
Sbjct: 154 DCEHLKRWC-------DQLADDNRRLHKELAELR 180
>Os04g0548700 Homeodomain-like containing protein
Length = 247
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 41/61 (67%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KK RLS +Q LE SF L P +KA LA+ LGL+PRQV +WFQNRRAR K KQ E
Sbjct: 82 KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEV 141
Query: 164 D 164
D
Sbjct: 142 D 142
>Os02g0565600 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 349
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KK RLS EQ LE SF+ + L P++K+ LA L L+PRQV +WFQNRRAR K KQ E
Sbjct: 153 KKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEV 212
Query: 164 D 164
D
Sbjct: 213 D 213
>Os06g0140700 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 308
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 42/61 (68%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KK RLS +Q LE F++ + L P++K LA LGL+PRQV +WFQNRRAR K KQ E
Sbjct: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
Query: 164 D 164
D
Sbjct: 175 D 175
>AY346328
Length = 292
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
KK RLS EQ LE SF+ + L P++K+ LA L L+PRQV +WFQNRRAR K KQ E
Sbjct: 96 KKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEV 155
Query: 164 D 164
D
Sbjct: 156 D 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,082,431
Number of extensions: 169650
Number of successful extensions: 501
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 20
Length of query: 351
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 249
Effective length of database: 11,709,973
Effective search space: 2915783277
Effective search space used: 2915783277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)