Os06g0140700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homeodomain leucine zipper protein (Fragment).
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Os06g0140700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homeodomain leucine zipper protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 315.25 | 0.834 | 8.1 | -2.74 | 0.75 | 0.628 | 0.484 | -4.72 | -0.697 | 22.4 | 10.04 | 1436 | -- | -- |
| 352.93 | 0.875 | 8.07 | -2.05 | 0.762 | 0.747 | 0.294 | -- | -0.529 | 22.1 | 10.1 | 1442 | -- | -- |
| 316.17 | 0.828 | 8.1 | -2.76 | 0.747 | 0.633 | -- | -4.69 | -0.697 | 22.5 | 10.04 | 1438 | -- | -- |
| 352.34 | 0.874 | 8.05 | -2.05 | 0.807 | 0.632 | -- | -- | -0.463 | 22.2 | 10.04 | 1387 | -- | -- |
| 344.32 | 0.864 | 8.08 | -2.71 | -- | 0.977 | -- | -4.03 | -0.724 | -- | 10.03 | 1316 | -- | -- |
| 357.22 | 0.886 | 7.94 | -1.83 | 0.731 | -- | 0.457 | -- | -0.243 | 22.3 | -- | -- | -- | -- |
| 358.05 | 0.886 | 7.94 | -1.85 | 0.728 | -- | -- | -- | -0.245 | 22.4 | -- | -- | -- | -- |
| 355.19 | 0.878 | 7.98 | -2.17 | -- | 0.905 | -- | -- | -0.392 | -- | 0.1899 | 1116 | -- | -- |
| 442.42 | 0.985 | 7.89 | -- | 0.59 | -0.367 | -- | -- | -0.0317 | 21.6 | 30.01 | 3199 | -- | -- |
| 390.49 | 0.923 | 7.92 | -1.83 | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
| 447.84 | 0.99 | 7.89 | -- | 0.718 | -- | -- | -- | -0.0391 | 22.3 | -- | -- | -- | -- |
| 438.79 | 0.976 | 7.91 | -- | -- | 1.41 | -- | -- | -0.18 | -- | 6.48 | 1147 | -- | -- |
| 479.17 | 1.02 | 7.87 | -- | -- | -- | -- | -- | -0.0385 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 307.69 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 13 | 308.91 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 15 | 308.97 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 21 | 308.98 | wind | 7 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 34 | 309.13 | wind | 7 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 43 | 309.23 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 102 | 312.15 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 104 | 312.41 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 119 | 313.05 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 123 | 313.08 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 126 | 313.08 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 139 | 313.14 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 155 | 313.23 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 6 | 15 |
| 158 | 313.33 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 160 | 313.38 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 161 | 313.38 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 177 | 314.14 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 3 |
| 185 | 314.37 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 193 | 314.44 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 203 | 314.47 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 9 |
| 216 | 314.67 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 221 | 314.74 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 223 | 314.74 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 225 | 314.76 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 8 |
| 241 | 314.86 | radiation | 10 | 1440 | > th | dose independent | sin | 13 | NA |
| 258 | 315.11 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 273 | 315.30 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 279 | 315.33 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 288 | 315.40 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 300 | 315.41 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 368 | 315.42 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 375 | 315.48 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 408 | 315.57 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 413 | 315.59 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 414 | 315.61 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 416 | 315.61 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 10 | 3 |
| 419 | 315.62 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 423 | 315.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 438 | 315.66 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 443 | 315.67 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 445 | 315.69 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 7 | 6 |
| 469 | 315.79 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 498 | 315.86 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 4 | 10 |
| 520 | 315.92 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 528 | 315.94 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 550 | 316.07 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 575 | 316.18 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 711 | 316.71 | temperature | 25 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 786 | 316.94 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 8 |
| 797 | 316.97 | wind | 1 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 806 | 316.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 808 | 317.00 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 3 | NA |
| 831 | 317.07 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 22 | NA |
| 843 | 317.10 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 13 |
| 892 | 317.28 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 905 | 317.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 918 | 317.34 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 929 | 317.36 | wind | 1 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 937 | 317.37 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 945 | 317.40 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 947 | 317.40 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 966 | 317.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 7 |