BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0140700 Os06g0140700|AY206864
(308 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0140700 Similar to Homeodomain leucine zipper protein ... 330 1e-90
Os06g0140400 Similar to HAHB-6 (Fragment) 168 4e-42
Os04g0548700 Homeodomain-like containing protein 154 7e-38
Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza... 147 8e-36
Os09g0447000 Homeobox domain containing protein 140 1e-33
Os02g0565600 Similar to Homeodomain leucine zipper protein ... 140 1e-33
AY346328 139 2e-33
Os01g0643600 Homeobox domain containing protein 131 8e-31
Os06g0698200 119 2e-27
Os02g0149900 112 4e-25
Os08g0416000 Homeodomain leucine zipper protein 72 6e-13
Os10g0404900 Similar to HAHB-5 (Fragment) 72 8e-13
Os08g0481400 Similar to HAHB-7 (Fragment) 70 2e-12
Os02g0729700 Similar to HAHB-7 (Fragment) 69 4e-12
Os03g0188900 Similar to HAHB-7 (Fragment) 67 1e-11
Os09g0470500 Homeodomain leucine zipper protein 67 1e-11
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 67 2e-11
>Os06g0140700 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 308
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/268 (65%), Positives = 175/268 (65%)
Query: 41 NSIVGDVRRDQXXXXXXXXXXXXXXXEEMYQGRXXXXXXXXXXXXXXXGKRERELERXXX 100
NSIVGDVRRDQ EEMYQGR GKRERELER
Sbjct: 41 NSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDSAAALSSASGKRERELERSGS 100
Query: 101 XXXXXXXXXXXXXRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWF 160
RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWF
Sbjct: 101 GVDDDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWF 160
Query: 161 QNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKXXXXXXXXXXXXXXXX 220
QNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALK
Sbjct: 161 QNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSS 220
Query: 221 XXXTLTMCPSCRRVATAGAPHQPNHQQCHPKXXXXXXXXXXXXXXXXXXXXXXLPSHCQF 280
TLTMCPSCRRVATAGAPHQPNHQQCHPK LPSHCQF
Sbjct: 221 AAATLTMCPSCRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAAVAVAGGNVLPSHCQF 280
Query: 281 FPXXXXXXDRTSQSTWNAAAPLVTRELF 308
FP DRTSQSTWNAAAPLVTRELF
Sbjct: 281 FPAAAAAADRTSQSTWNAAAPLVTRELF 308
>Os06g0140400 Similar to HAHB-6 (Fragment)
Length = 256
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/139 (68%), Positives = 102/139 (73%), Gaps = 11/139 (7%)
Query: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
RKKLRLSKDQAAVLEECFKTH TL PKQKVALA L LRPRQVEVWFQNRRARTKLKQTE
Sbjct: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
Query: 174 VDCEYLKRWCERLADENKRLEKELADLRALKXXXXXXXXXXXXXXXXXXXTLTMCPSCRR 233
VDCE+LKRWC++LAD+N+RL KELA+LRALK TLTMC SC+R
Sbjct: 153 VDCEHLKRWCDQLADDNRRLHKELAELRALK------ATPTPPAAAPPLTTLTMCLSCKR 206
Query: 234 VATAGAPHQ-----PNHQQ 247
VA AG P P H Q
Sbjct: 207 VANAGVPSPAAAIFPGHPQ 225
>Os04g0548700 Homeodomain-like containing protein
Length = 247
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/121 (66%), Positives = 91/121 (75%), Gaps = 5/121 (4%)
Query: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
RKKLRLSKDQ+AVLE+ F+ H TLNP+QK LA +LGLRPRQVEVWFQNRRARTKLKQTE
Sbjct: 81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTE 140
Query: 174 VDCEYLKRWCERLADENKRLEKELADLRALKXXXXXXXXXXXXXXXXXXXTLTMCPSCRR 233
VDCE+LKR CE L +EN+RL+KE+ +LRALK TLTMCPSC R
Sbjct: 141 VDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCER 195
Query: 234 V 234
V
Sbjct: 196 V 196
>Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 93/125 (74%), Gaps = 1/125 (0%)
Query: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
RKKLRLSKDQAAVLE+ FK H+TLNPKQK ALA +L L+PRQVEVWFQNRRARTKLKQTE
Sbjct: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
Query: 174 VDCEYLKRWCERLADENKRLEKELADLRALKXXXXXXXXXX-XXXXXXXXXTLTMCPSCR 232
VDCE LKR CE L DEN+RL +EL +LRALK TLTMCPSC
Sbjct: 216 VDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCE 275
Query: 233 RVATA 237
RVA+A
Sbjct: 276 RVASA 280
>Os09g0447000 Homeobox domain containing protein
Length = 90
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/86 (81%), Positives = 78/86 (90%)
Query: 119 LSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEY 178
LSK+Q+A LEE FK HSTLNPKQK+ALA +L LRPRQVEVWFQNRRARTKLKQTEVDCEY
Sbjct: 1 LSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEY 60
Query: 179 LKRWCERLADENKRLEKELADLRALK 204
LKR CE L +EN+RL+KELA+LRALK
Sbjct: 61 LKRCCETLTEENRRLQKELAELRALK 86
>Os02g0565600 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 349
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 78/89 (87%)
Query: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
RKKLRLSK+Q++ LE+ FK HSTL PKQK LANRL LRPRQVEVWFQNRRARTKLKQTE
Sbjct: 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTE 211
Query: 174 VDCEYLKRWCERLADENKRLEKELADLRA 202
VDCE+LKR CERL EN+RL++E+A+LR
Sbjct: 212 VDCEHLKRCCERLTRENRRLQREVAELRG 240
>AY346328
Length = 292
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 78/89 (87%)
Query: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
RKKLRLSK+Q++ LE+ FK HSTL PKQK LANRL LRPRQVEVWFQNRRARTKLKQTE
Sbjct: 95 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTE 154
Query: 174 VDCEYLKRWCERLADENKRLEKELADLRA 202
VDCE+LKR CERL EN+RL++E+A+LR
Sbjct: 155 VDCEHLKRCCERLTRENRRLQREVAELRG 183
>Os01g0643600 Homeobox domain containing protein
Length = 229
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Query: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
KKLRLSK+Q+ +LEE F+ + TL PKQK ALA +L LRPRQVEVWFQNRRARTKLKQTE+
Sbjct: 78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEM 137
Query: 175 DCEYLKRWCERLADENKRLEKELADLRALKXXXXXXXXXXXXXXXXXXXTLTMCPSCRRV 234
+CEYLKR L +EN+RL++E+ +LRA++ LTMCP C R+
Sbjct: 138 ECEYLKRCFGSLTEENRRLQREVEELRAMR-VAPPTVLSPHTRQPLPASALTMCPRCERI 196
Query: 235 ATAGAP 240
A P
Sbjct: 197 TAATGP 202
>Os06g0698200
Length = 256
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
RKKL+L+K+Q+ +LE+ F+ H+ L+ QK LA +L L+PRQVEVWFQNRRARTKLKQTE
Sbjct: 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTE 173
Query: 174 VDCEYLKRWCERLADENKRLEKELADLRALKXXXXXXXXXXXXXX---XXXXXTLTMCPS 230
VDCE+LKR CE L +ENK+L+ EL +LR L + +CPS
Sbjct: 174 VDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPS 233
Query: 231 CRRVAT 236
C +V
Sbjct: 234 CEKVTV 239
>Os02g0149900
Length = 248
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/87 (60%), Positives = 69/87 (79%)
Query: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
RKKLRL+ +QA +LE+ F+ H+ L+ +K LA +LGL RQVEVWFQNRRARTKLKQTE
Sbjct: 116 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTE 175
Query: 174 VDCEYLKRWCERLADENKRLEKELADL 200
DC+ L+RWC+ LA +N RL ++LA+L
Sbjct: 176 ADCDLLRRWCDHLAADNARLRRDLAEL 202
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 55/88 (62%)
Query: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
KK RL+ +Q +LE F+ + L P++K LA RLG+ PRQV VWFQNRRAR K KQ E
Sbjct: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
Query: 175 DCEYLKRWCERLADENKRLEKELADLRA 202
D + LK + LA ++ L + LRA
Sbjct: 146 DFDRLKAAYDALAADHHALLSDNDRLRA 173
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
KK RLS +Q LE F++ + L P++K LA LGL+PRQV +WFQNRRAR K KQ E
Sbjct: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
Query: 175 DCEYLKRWCERLADENKRL----EKELADLRALK 204
D + L+R + EN L K A++ ALK
Sbjct: 164 DFDALRRQLDAARAENDALLSLNSKLHAEIVALK 197
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
KK RLS +Q LE F+T + L P++K LA LGL+PRQV VWFQNRRAR K KQ E
Sbjct: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
Query: 175 DCEYLKRWCERLADENKRLEKE----LADLRALK 204
D L++ + L ++ L ++ LA+++ LK
Sbjct: 103 DYAALRQSYDALRADHDALRRDKDALLAEIKELK 136
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
KK RL+ +Q +LE F+ + L P++K LA +LGL+PRQV VWFQNRRAR K KQ E
Sbjct: 77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLER 136
Query: 175 DCEYLKRWCERL-ADENKRLE 194
D + LK + L AD + L+
Sbjct: 137 DFDRLKASFDALRADHDALLQ 157
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 14/97 (14%)
Query: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE- 173
KK RL+ +Q LE F T + L+P +K +A LGL+PRQV VWFQNRRAR K KQ E
Sbjct: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLER 131
Query: 174 -------------VDCEYLKRWCERLADENKRLEKEL 197
DC+ L+R + LA E + L ++L
Sbjct: 132 DFAALRARHDALRADCDALRRDKDALAAEIRELREKL 168
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEV 174
KK RLS +Q LE F+ + L P++K LA LGL+PRQV VWFQNRRAR K KQ E
Sbjct: 51 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 110
Query: 175 DCEYLKRWCERLADENKRLEKE----LADLRALK 204
D L+ + L ++ L ++ LA+++ LK
Sbjct: 111 DYAALRHSYDSLRLDHDALRRDKDALLAEIKELK 144
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%)
Query: 115 KKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
+K R S++Q LE F T + L P+QK+ LA LGL+PRQV +WFQN+RAR K KQ E
Sbjct: 52 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLE 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,328,335
Number of extensions: 133736
Number of successful extensions: 515
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 19
Length of query: 308
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 207
Effective length of database: 11,762,187
Effective search space: 2434772709
Effective search space used: 2434772709
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)