Os06g0140400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HAHB-6 (Fragment).
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Os06g0140400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HAHB-6 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.84 | 0.668 | 3.03 | 0.867 | 0.191 | 0.247 | -0.261 | -4.03 | 0.0609 | 24 | 29.7 | 1567 | -- | -- |
| 203.85 | 0.665 | 3.12 | 0.0722 | 0.172 | -0.168 | -0.316 | -- | -0.0209 | 0.355 | 33.7 | 1084 | -- | -- |
| 202.12 | 0.662 | 3.03 | 0.873 | 0.193 | 0.247 | -- | -4.01 | 0.0619 | 23.7 | 29.7 | 1567 | -- | -- |
| 204.14 | 0.665 | 3.12 | 0.0656 | 0.181 | -0.181 | -- | -- | -0.0324 | 23.9 | 33.67 | 1098 | -- | -- |
| 204.47 | 0.666 | 3.03 | 0.884 | -- | 0.241 | -- | -4.04 | 0.0615 | -- | 29.7 | 1567 | -- | -- |
| 205.55 | 0.672 | 3.13 | 0.101 | 0.207 | -- | -0.241 | -- | -0.064 | 0.278 | -- | -- | -- | -- |
| 205.8 | 0.672 | 3.13 | 0.111 | 0.208 | -- | -- | -- | -0.0626 | 0.086 | -- | -- | -- | -- |
| 206.2 | 0.669 | 3.12 | 0.0639 | -- | -0.189 | -- | -- | -0.0374 | -- | 33.66 | 1084 | -- | -- |
| 204.27 | 0.666 | 3.13 | -- | 0.178 | -0.189 | -- | -- | -0.0362 | 23.8 | 33.7 | 1084 | -- | -- |
| 208.52 | 0.675 | 3.13 | 0.118 | -- | -- | -- | -- | -0.0596 | -- | -- | -- | -- | -- |
| 206.12 | 0.672 | 3.14 | -- | 0.209 | -- | -- | -- | -0.075 | 0.116 | -- | -- | -- | -- |
| 206.27 | 0.669 | 3.12 | -- | -- | -0.227 | -- | -- | -0.03 | -- | 33.6 | 1084 | -- | -- |
| 208.88 | 0.675 | 3.13 | -- | -- | -- | -- | -- | -0.0727 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.87 | wind | 3.0 | 10 | > th | dose independent | rect. | 1 | 1 |
| 11 | 191.45 | wind | 3.0 | 90 | > th | dose dependent | rect. | 24 | 1 |
| 15 | 192.96 | humidity | 90.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 19 | 193.56 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 20 | 193.57 | wind | 1.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 21 | 193.61 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 28 | 193.61 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 38 | 193.66 | humidity | 70.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 101 | 193.66 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 173 | 194.20 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 6 | 8 |
| 178 | 194.75 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 18 | 16 |
| 206 | 195.86 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 4 | 10 |
| 209 | 195.96 | wind | 3.0 | 90 | > th | dose independent | rect. | 24 | 8 |
| 217 | 196.18 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 8 |
| 227 | 196.30 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 254 | 196.68 | humidity | 60.0 | 10 | < th | dose independent | rect. | 18 | 1 |
| 276 | 196.84 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 2 | 6 |
| 283 | 196.95 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 1 | 1 |
| 301 | 197.24 | radiation | 1.0 | 10 | > th | dose independent | rect. | 18 | 1 |
| 321 | 197.37 | humidity | 90.0 | 10 | > th | dose independent | rect. | 19 | 7 |
| 332 | 197.54 | wind | 3.0 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 337 | 197.57 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 1 | 1 |
| 339 | 197.62 | wind | 3.0 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 356 | 197.75 | wind | 3.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 358 | 197.77 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 364 | 197.80 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 377 | 197.84 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 380 | 197.88 | wind | 9.0 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 405 | 198.02 | temperature | 20.0 | 90 | < th | dose independent | rect. | 24 | 3 |
| 416 | 198.10 | wind | 5.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 418 | 198.15 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 4 | NA |
| 434 | 198.22 | atmosphere | 1000.0 | 270 | < th | dose independent | sin | 3 | NA |
| 438 | 198.25 | temperature | 30.0 | 10 | > th | dose independent | rect. | 18 | 16 |
| 444 | 198.28 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 2 | 7 |
| 457 | 198.34 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 2 |
| 459 | 198.34 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 2 |
| 480 | 198.39 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 512 | 198.44 | wind | 5.0 | 270 | > th | dose independent | rect. | 22 | 11 |
| 521 | 198.48 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 529 | 198.48 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 543 | 198.53 | humidity | 90.0 | 90 | < th | dose independent | rect. | 15 | 11 |
| 575 | 198.63 | wind | 9.0 | 270 | > th | dose independent | rect. | 19 | 4 |
| 581 | 198.65 | wind | 9.0 | 270 | > th | dose independent | rect. | 22 | 1 |
| 602 | 198.65 | wind | 9.0 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 606 | 198.65 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 13 | 2 |
| 620 | 198.65 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 19 | 7 |
| 627 | 198.66 | humidity | 50.0 | 90 | < th | dose independent | rect. | 13 | 2 |
| 629 | 198.66 | wind | 9.0 | 30 | > th | dose independent | rect. | 1 | 10 |
| 636 | 198.66 | wind | 9.0 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 774 | 198.75 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 779 | 198.77 | humidity | 90.0 | 90 | > th | dose independent | rect. | 14 | 12 |
| 784 | 198.78 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 805 | 198.81 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 822 | 198.83 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 859 | 198.89 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 24 | 21 |
| 861 | 198.89 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 24 | 21 |
| 884 | 198.93 | wind | 3.0 | 270 | < th | dose independent | rect. | 23 | 9 |
| 885 | 198.93 | humidity | 90.0 | 90 | > th | dose independent | rect. | 9 | 17 |
| 889 | 198.93 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 21 | 5 |
| 898 | 198.97 | wind | 1.0 | 720 | > th | dose independent | rect. | 5 | 1 |
| 930 | 199.00 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 6 |