BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0140400 Os06g0140400|AK102692
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0140400 Similar to HAHB-6 (Fragment) 292 1e-79
Os06g0140700 Similar to Homeodomain leucine zipper protein ... 165 3e-41
Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza... 142 2e-34
Os02g0565600 Similar to Homeodomain leucine zipper protein ... 140 1e-33
AY346328 139 2e-33
Os04g0548700 Homeodomain-like containing protein 135 3e-32
Os09g0447000 Homeobox domain containing protein 134 7e-32
Os01g0643600 Homeobox domain containing protein 125 2e-29
Os06g0698200 114 6e-26
Os02g0149900 112 2e-25
Os02g0729700 Similar to HAHB-7 (Fragment) 76 2e-14
Os10g0404900 Similar to HAHB-5 (Fragment) 75 7e-14
Os08g0416000 Homeodomain leucine zipper protein 73 2e-13
Os08g0481400 Similar to HAHB-7 (Fragment) 73 3e-13
Os03g0188900 Similar to HAHB-7 (Fragment) 71 6e-13
Os09g0470500 Homeodomain leucine zipper protein 70 1e-12
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 67 1e-11
>Os06g0140400 Similar to HAHB-6 (Fragment)
Length = 256
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 159/256 (62%), Positives = 159/256 (62%)
Query: 1 MERQXXXXXXXXXXXXTTAATWPAAGFCLNSGMAEQEVIXXXXXXXXXXXXXXXFACXXX 60
MERQ TTAATWPAAGFCLNSGMAEQEVI FAC
Sbjct: 1 MERQGLDLGLSLGLGLTTAATWPAAGFCLNSGMAEQEVIRRDDVVAATAAEDERFACSPG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKKLRLSKDQAAVLEECFKTHHTLTPKQ 120
RKKLRLSKDQAAVLEECFKTHHTLTPKQ
Sbjct: 61 SPVSSGSGKRGSGSGSGDEVDDAGCDVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQ 120
Query: 121 KVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR 180
KVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR
Sbjct: 121 KVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR 180
Query: 181 XXXXXXXXXXXXXXXXXXXMCLSCKRVANAGVPSPAAAIFPGHPQFLCGFRDHXXXXXXX 240
MCLSCKRVANAGVPSPAAAIFPGHPQFLCGFRDH
Sbjct: 181 ALKATPTPPAAAPPLTTLTMCLSCKRVANAGVPSPAAAIFPGHPQFLCGFRDHAGAASSS 240
Query: 241 XXXXXXXXXKAVRAAR 256
KAVRAAR
Sbjct: 241 YGGASSGLAKAVRAAR 256
>Os06g0140700 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 308
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 93/127 (73%), Gaps = 6/127 (4%)
Query: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
RKKLRLSKDQAAVLEECFKTH TL PKQKVALA L LRPRQVEVWFQNRRARTKLKQTE
Sbjct: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
Query: 153 VDCEHLKRWCDQLADDNRRLHKELAELRXXX------XXXXXXXXXXXXXXXXMCLSCKR 206
VDCE+LKRWC++LAD+N+RL KELA+LR MC SC+R
Sbjct: 174 VDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRR 233
Query: 207 VANAGVP 213
VA AG P
Sbjct: 234 VATAGAP 240
>Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/127 (62%), Positives = 88/127 (69%), Gaps = 7/127 (5%)
Query: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
RKKLRLSKDQAAVLE+ FK H+TL PKQK ALA+ LNL+PRQVEVWFQNRRARTKLKQTE
Sbjct: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
Query: 153 VDCEHLKRWCDQLADDNRRLHKELAELRXXXXXXX-------XXXXXXXXXXXXMCLSCK 205
VDCE LKR C+ L D+NRRLH+EL ELR MC SC+
Sbjct: 216 VDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCE 275
Query: 206 RVANAGV 212
RVA+A
Sbjct: 276 RVASAAT 282
>Os02g0565600 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 349
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 76/88 (86%)
Query: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
RKKLRLSK+Q++ LE+ FK H TLTPKQK LA LNLRPRQVEVWFQNRRARTKLKQTE
Sbjct: 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTE 211
Query: 153 VDCEHLKRWCDQLADDNRRLHKELAELR 180
VDCEHLKR C++L +NRRL +E+AELR
Sbjct: 212 VDCEHLKRCCERLTRENRRLQREVAELR 239
>AY346328
Length = 292
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/88 (76%), Positives = 76/88 (86%)
Query: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
RKKLRLSK+Q++ LE+ FK H TLTPKQK LA LNLRPRQVEVWFQNRRARTKLKQTE
Sbjct: 95 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTE 154
Query: 153 VDCEHLKRWCDQLADDNRRLHKELAELR 180
VDCEHLKR C++L +NRRL +E+AELR
Sbjct: 155 VDCEHLKRCCERLTRENRRLQREVAELR 182
>Os04g0548700 Homeodomain-like containing protein
Length = 247
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
RKKLRLSKDQ+AVLE+ F+ H TL P+QK LA+ L LRPRQVEVWFQNRRARTKLKQTE
Sbjct: 81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTE 140
Query: 153 VDCEHLKRWCDQLADDNRRLHKELAELRXXXXXXX-XXXXXXXXXXXXMCLSCKRV 207
VDCE LKR C+ L ++NRRL KE+ ELR MC SC+RV
Sbjct: 141 VDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERV 196
>Os09g0447000 Homeobox domain containing protein
Length = 90
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 73/83 (87%)
Query: 98 LSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEH 157
LSK+Q+A LEE FK H TL PKQK+ALAK LNLRPRQVEVWFQNRRARTKLKQTEVDCE+
Sbjct: 1 LSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEY 60
Query: 158 LKRWCDQLADDNRRLHKELAELR 180
LKR C+ L ++NRRL KELAELR
Sbjct: 61 LKRCCETLTEENRRLQKELAELR 83
>Os01g0643600 Homeobox domain containing protein
Length = 229
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 73/87 (83%)
Query: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
KKLRLSK+Q+ +LEE F+ +HTLTPKQK ALA L LRPRQVEVWFQNRRARTKLKQTE+
Sbjct: 78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEM 137
Query: 154 DCEHLKRWCDQLADDNRRLHKELAELR 180
+CE+LKR L ++NRRL +E+ ELR
Sbjct: 138 ECEYLKRCFGSLTEENRRLQREVEELR 164
>Os06g0698200
Length = 256
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 71/88 (80%)
Query: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
RKKL+L+K+Q+ +LE+ F+ H+ L+ QK LA+ L L+PRQVEVWFQNRRARTKLKQTE
Sbjct: 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTE 173
Query: 153 VDCEHLKRWCDQLADDNRRLHKELAELR 180
VDCE LKR C+ L ++N++L EL ELR
Sbjct: 174 VDCEFLKRCCESLTEENKQLKHELMELR 201
>Os02g0149900
Length = 248
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 67/87 (77%)
Query: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
RKKLRL+ +QA +LE+ F+ H+ L+ +K LA L L RQVEVWFQNRRARTKLKQTE
Sbjct: 116 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTE 175
Query: 153 VDCEHLKRWCDQLADDNRRLHKELAEL 179
DC+ L+RWCD LA DN RL ++LAEL
Sbjct: 176 ADCDLLRRWCDHLAADNARLRRDLAEL 202
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 57/93 (61%), Gaps = 7/93 (7%)
Query: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
KK RL+ +Q +LE F+ + L P++K LA+ L L+PRQV VWFQNRRAR K KQ E
Sbjct: 77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLER 136
Query: 154 DCEHLKRWCDQL-AD------DNRRLHKELAEL 179
D + LK D L AD DN RLH ++ L
Sbjct: 137 DFDRLKASFDALRADHDALLQDNHRLHSQVMSL 169
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 7/94 (7%)
Query: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
KK RLS +Q LE F++ + L P++K LA++L L+PRQV +WFQNRRAR K KQ E
Sbjct: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
Query: 154 DCEHLKRWC-------DQLADDNRRLHKELAELR 180
D + L+R D L N +LH E+ L+
Sbjct: 164 DFDALRRQLDAARAENDALLSLNSKLHAEIVALK 197
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 53/87 (60%)
Query: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
KK RL+ +Q +LE F+ + L P++K LA+ L + PRQV VWFQNRRAR K KQ E
Sbjct: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
Query: 154 DCEHLKRWCDQLADDNRRLHKELAELR 180
D + LK D LA D+ L + LR
Sbjct: 146 DFDRLKAAYDALAADHHALLSDNDRLR 172
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
KK RLS +Q LE F+T + L P++K LA+ L L+PRQV VWFQNRRAR K KQ E
Sbjct: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
Query: 154 DCEHLKRWCDQLADDNRRLHKE----LAELR 180
D L++ D L D+ L ++ LAE++
Sbjct: 103 DYAALRQSYDALRADHDALRRDKDALLAEIK 133
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
KK RL+ +Q LE F T + L P +K +A+ L L+PRQV VWFQNRRAR K KQ E
Sbjct: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLER 131
Query: 154 DC-------EHLKRWCDQLADDNRRLHKELAELR 180
D + L+ CD L D L E+ ELR
Sbjct: 132 DFAALRARHDALRADCDALRRDKDALAAEIRELR 165
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
KK RLS +Q LE F+ + L P++K LA+ L L+PRQV VWFQNRRAR K KQ E
Sbjct: 51 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 110
Query: 154 DCEHLKRWCDQLADDNRRLHKE----LAELR 180
D L+ D L D+ L ++ LAE++
Sbjct: 111 DYAALRHSYDSLRLDHDALRRDKDALLAEIK 141
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%)
Query: 94 KKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEV 153
+K R S++Q LE F T L P+QK+ LA+ L L+PRQV +WFQN+RAR K KQ E
Sbjct: 52 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLER 111
Query: 154 DCEHLKRWCDQLADDNRRLHKE 175
+ L+ D L L KE
Sbjct: 112 EYSALRDDYDALLCSYESLKKE 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.132 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,168,075
Number of extensions: 141745
Number of successful extensions: 592
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 585
Number of HSP's successfully gapped: 19
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)