Os09g0447000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeobox domain containing protein.
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Os09g0447000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeobox domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.71 | 0.575 | 7.38 | 1.18 | 0.705 | 2.06 | 0.913 | -1.18 | 0.824 | 2.88 | 31.46 | 95 | -- | -- |
| 150.77 | 0.572 | 7.4 | 0.989 | 0.693 | 2.05 | 0.589 | -- | 0.777 | 2.9 | 31.15 | 94 | -- | -- |
| 151.68 | 0.574 | 7.39 | 1.03 | 0.691 | 2.09 | -- | -0.318 | 0.789 | 3.06 | 31.42 | 90 | -- | -- |
| 151.78 | 0.574 | 7.4 | 0.976 | 0.689 | 2.08 | -- | -- | 0.778 | 3.06 | 31.3 | 89 | -- | -- |
| 170.21 | 0.608 | 7.37 | 1.16 | -- | 2.78 | -- | -0.0645 | 0.905 | -- | 31.47 | 71 | -- | -- |
| 202.61 | 0.667 | 7.48 | 0.508 | 1.35 | -- | 0.875 | -- | 0.422 | 3.01 | -- | -- | -- | -- |
| 205.17 | 0.671 | 7.48 | 0.489 | 1.35 | -- | -- | -- | 0.416 | 3.04 | -- | -- | -- | -- |
| 170.2 | 0.608 | 7.37 | 1.16 | -- | 2.77 | -- | -- | 0.904 | -- | 31.45 | 73 | -- | -- |
| 173.76 | 0.617 | 7.44 | -- | 0.85 | 1.64 | -- | -- | 0.606 | 3.56 | 31.3 | 89 | -- | -- |
| 309.69 | 0.822 | 7.48 | 0.547 | -- | -- | -- | -- | 0.451 | -- | -- | -- | -- | -- |
| 211.47 | 0.68 | 7.49 | -- | 1.36 | -- | -- | -- | 0.362 | 3.04 | -- | -- | -- | -- |
| 202.56 | 0.663 | 7.41 | -- | -- | 2.45 | -- | -- | 0.726 | -- | 31.82 | 28 | -- | -- |
| 317.57 | 0.832 | 7.49 | -- | -- | -- | -- | -- | 0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 4 | 143.82 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 5 | 144.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 6 | 144.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 12 | 144.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 20 | 145.25 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 35 | 146.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 46 | 147.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 50 | 147.35 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 55 | 147.52 | temperature | 10 | 90 | > th | dose dependent | sin | 23 | NA |
| 61 | 147.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 66 | 147.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 100 | 148.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 103 | 149.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 114 | 149.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 115 | 149.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 116 | 149.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 12 |
| 124 | 149.78 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 125 | 149.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 142 | 150.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 154 | 150.33 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 159 | 150.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 163 | 150.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 164 | 150.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 165 | 150.59 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 189 | 151.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 291 | 152.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 341 | 152.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 343 | 152.94 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 352 | 153.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 356 | 153.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 379 | 153.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 424 | 153.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 504 | 154.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 526 | 154.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 544 | 155.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 556 | 155.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 675 | 156.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 688 | 156.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 698 | 156.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 718 | 156.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 805 | 156.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 854 | 157.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 943 | 157.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |