Os01g0643600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0643600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeobox domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	4.1	(0.199)	R²	:	0.103
β₁	:	-7.4	(1.16)	R²_dD	:	5.19	R²_D	:	-7.79
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	137	(21.3)	R²_dE	:	223	R²_E	:	-222
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-793	(124)	R²_dD*E	:	222	R²_D*E	:	-223
γ₁	:	-0.124	(0.0856)	R²_dN8	:	0.00555	R²_N8	:	-2.46
σ	:	0.749
deviance	:	258.8
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	999.9
memory length	:	102
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	0.0167
open length of G	:	6.3

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
256.49	0.752	4.1	-7.39	0.154	137	0.674	-793	-0.121	16.5	999.9	96	0.164	6.02
279.7	0.785	2.87	-0.0711	0.105	1.46	0.602	--	-0.132	16.1	999.9	96	0.164	6.02
256.96	0.747	4.11	-7.4	0.187	137	--	-793	-0.118	18.4	999.9	102	0.0166	6.27
276.04	0.779	2.87	-0.0717	0.175	1.6	--	--	-0.122	18.6	1003	76	0.0152	6.63
258.8	0.749	4.1	-7.4	--	137	--	-793	-0.124	--	999.9	102	0.0167	6.3
285.69	0.792	2.87	-0.052	0.0998	--	-0.38	--	-0.145	22.1	--	--	--	--
286	0.792	2.87	-0.0344	0.128	--	--	--	-0.143	19.9	--	--	--	--
277.55	0.776	2.86	-0.068	--	1.55	--	--	-0.119	--	1003	56	0.282	6.8
276.1	0.774	2.86	--	0.176	1.58	--	--	-0.114	18.6	1003	53	0.206	6.76
286.88	0.791	2.87	-0.0358	--	--	--	--	-0.144	--	--	--	--	--
286.03	0.791	2.87	--	0.128	--	--	--	-0.139	19.8	--	--	--	--
277.68	0.776	2.86	--	--	1.5	--	--	-0.118	--	1003	53	0.205	6.84
286.91	0.791	2.87	--	--	--	--	--	-0.14	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	256.54	atmosphere	1000.0	90	< th	dose dependent	rect.	24	6
7	257.47	atmosphere	1000.0	90	< th	dose independent	rect.	1	5
9	257.77	atmosphere	1000.0	30	< th	dose independent	rect.	24	7
19	258.82	atmosphere	1000.0	10	< th	dose independent	rect.	4	2
20	258.85	atmosphere	1000.0	10	< th	dose dependent	rect.	4	2
28	259.58	atmosphere	1000.0	90	< th	dose dependent	rect.	3	3
29	259.70	atmosphere	1000.0	90	< th	dose independent	rect.	4	1
32	259.73	atmosphere	1000.0	90	< th	dose dependent	rect.	4	1
54	261.00	atmosphere	1000.0	270	< th	dose dependent	rect.	1	2
55	261.37	atmosphere	1000.0	270	< th	dose independent	rect.	1	2
140	269.86	wind	3.0	30	< th	dose independent	rect.	12	2
141	269.86	atmosphere	1000.0	90	< th	dose independent	rect.	16	14
147	270.07	atmosphere	1000.0	10	< th	dose independent	rect.	17	14
152	270.21	atmosphere	1000.0	90	< th	dose independent	rect.	17	4
159	270.36	atmosphere	1000.0	90	< th	dose dependent	rect.	17	4
164	270.43	atmosphere	1000.0	10	< th	dose independent	rect.	17	3
169	270.43	atmosphere	1000.0	10	< th	dose dependent	rect.	17	3
216	270.82	precipitation	0.1	10	> th	dose dependent	sin	15	NA
222	270.95	precipitation	0.1	30	> th	dose independent	rect.	22	4
224	270.95	precipitation	0.1	30	> th	dose dependent	rect.	22	4
245	271.21	precipitation	0.1	10	> th	dose independent	sin	14	NA
251	271.26	precipitation	0.1	90	> th	dose independent	rect.	1	2
252	271.26	precipitation	0.1	90	> th	dose dependent	rect.	1	2
263	271.31	precipitation	0.1	10	< th	dose independent	sin	14	NA
264	271.31	precipitation	0.1	10	> th	dose independent	rect.	1	1
274	271.31	precipitation	0.1	10	< th	dose dependent	sin	14	NA
275	271.31	precipitation	0.1	10	> th	dose dependent	rect.	1	1
297	271.43	atmosphere	1000.0	90	< th	dose independent	rect.	12	18
326	271.95	atmosphere	1000.0	270	< th	dose independent	rect.	10	20
355	272.27	atmosphere	1000.0	10	< th	dose independent	rect.	22	9
366	272.40	atmosphere	1005.0	10	< th	dose independent	rect.	13	14
368	272.40	precipitation	0.1	10	> th	dose dependent	rect.	17	12
436	272.47	wind	3.0	30	< th	dose dependent	rect.	12	2
491	272.65	atmosphere	1005.0	90	< th	dose independent	rect.	12	14
537	272.89	atmosphere	1000.0	90	< th	dose independent	rect.	24	18
543	272.98	wind	3.0	30	> th	dose dependent	rect.	3	4
560	273.17	atmosphere	1000.0	270	> th	dose independent	sin	10	NA
609	273.57	atmosphere	1005.0	90	< th	dose dependent	rect.	13	1
611	273.59	wind	3.0	30	> th	dose independent	rect.	3	4
627	273.71	atmosphere	1005.0	10	< th	dose dependent	rect.	14	1
656	273.89	wind	1.0	270	< th	dose dependent	rect.	3	1
663	273.96	atmosphere	1000.0	90	< th	dose independent	rect.	16	22
669	273.99	atmosphere	1000.0	270	< th	dose independent	sin	10	NA
782	274.58	precipitation	0.1	10	> th	dose dependent	rect.	21	21
792	274.61	precipitation	0.1	10	> th	dose dependent	no	NA	NA
829	274.61	precipitation	0.1	10	> th	dose dependent	rect.	1	23
830	274.61	precipitation	0.1	10	> th	dose dependent	rect.	3	23
843	274.61	precipitation	0.1	10	> th	dose dependent	rect.	23	23
849	274.64	humidity	80.0	10	< th	dose independent	rect.	5	1
854	274.64	humidity	80.0	10	< th	dose dependent	rect.	5	1
860	274.65	precipitation	0.1	10	> th	dose dependent	rect.	1	21
897	274.73	precipitation	0.1	10	> th	dose dependent	rect.	1	17
962	274.79	humidity	60.0	10	< th	dose independent	rect.	14	1
971	274.81	precipitation	0.1	10	< th	dose independent	sin	17	NA
976	274.81	precipitation	0.1	10	< th	dose dependent	sin	17	NA