Os10g0561800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : homeodomain leucine zipper protein hox1 [Oryza sativa (japonica cultivar-group)].
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Os10g0561800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : homeodomain leucine zipper protein hox1 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.32 | 0.442 | 10.1 | -0.129 | 0.976 | 0.922 | 1.94 | -0.0832 | 0.281 | 18.9 | 73.03 | 812 | -- | -- |
| 88.2 | 0.437 | 10.1 | -0.134 | 0.928 | 0.89 | 1.99 | -- | 0.284 | 19 | 73.36 | 849 | -- | -- |
| 93.87 | 0.451 | 10.1 | -0.0626 | 1.06 | 0.916 | -- | -1.53 | 0.307 | 18.2 | 73.9 | 709 | -- | -- |
| 96.15 | 0.46 | 10.1 | -0.212 | 1.04 | 0.519 | -- | -- | 0.263 | 15.7 | 73.9 | 709 | -- | -- |
| 119.48 | 0.509 | 10.1 | -0.178 | -- | 0.96 | -- | -0.678 | 0.406 | -- | 82 | 2674 | -- | -- |
| 105.41 | 0.481 | 10.1 | -0.262 | 0.576 | -- | 1.58 | -- | 0.232 | 18.2 | -- | -- | -- | -- |
| 109.05 | 0.489 | 10.1 | -0.273 | 0.619 | -- | -- | -- | 0.24 | 17 | -- | -- | -- | -- |
| 117.99 | 0.506 | 10.1 | -0.305 | -- | 0.92 | -- | -- | 0.405 | -- | 81.99 | 2681 | -- | -- |
| 96.69 | 0.46 | 10.1 | -- | 1.07 | 0.547 | -- | -- | 0.281 | 15.7 | 74 | 1506 | -- | -- |
| 129.22 | 0.531 | 10.1 | -0.296 | -- | -- | -- | -- | 0.224 | -- | -- | -- | -- | -- |
| 111.02 | 0.493 | 10.1 | -- | 0.624 | -- | -- | -- | 0.271 | 17 | -- | -- | -- | -- |
| 114.6 | 0.499 | 10.1 | -- | -- | 0.676 | -- | -- | 0.338 | -- | 73.52 | 1293 | -- | -- |
| 131.53 | 0.535 | 10.1 | -- | -- | -- | -- | -- | 0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.71 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 2 | 74.81 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 5 | 75.68 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 7 | 76.71 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 10 | 76.81 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 21 | 78.10 | temperature | 30.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 41 | 78.91 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 91 | 81.03 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 100 | 81.39 | temperature | 25.0 | 270 | < th | dose independent | sin | 0 | NA |
| 156 | 82.60 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 12 |
| 174 | 83.07 | temperature | 10.0 | 30 | > th | dose dependent | sin | 2 | NA |
| 216 | 83.68 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 12 |
| 278 | 84.50 | humidity | 50.0 | 10 | > th | dose dependent | sin | 22 | NA |
| 282 | 84.57 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 291 | 84.65 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 305 | 84.80 | temperature | 25.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 311 | 84.89 | humidity | 70.0 | 720 | > th | dose independent | sin | 10 | NA |
| 324 | 85.02 | temperature | 25.0 | 10 | < th | dose independent | rect. | 6 | 12 |
| 421 | 85.70 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 424 | 85.70 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 8 |
| 435 | 85.76 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 4 | 12 |
| 436 | 85.77 | humidity | 70.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 466 | 85.94 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 486 | 86.05 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 13 |
| 489 | 86.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 518 | 86.26 | humidity | 80.0 | 270 | > th | dose independent | sin | 1 | NA |
| 540 | 86.35 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 17 |
| 566 | 86.45 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 641 | 86.81 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 645 | 86.81 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 24 | 15 |
| 688 | 87.03 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 690 | 87.04 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 707 | 87.11 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 749 | 87.27 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 791 | 87.48 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 21 |
| 793 | 87.48 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 21 |
| 805 | 87.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 10 | 8 |
| 809 | 87.53 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 19 |
| 814 | 87.53 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 826 | 87.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 10 |
| 828 | 87.59 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 8 |
| 835 | 87.62 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 863 | 87.74 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 872 | 87.79 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 959 | 88.00 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 963 | 88.00 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 976 | 88.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 986 | 88.07 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |