BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0561800 Os10g0561800|AK065404
(311 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza... 351 5e-97
Os04g0548700 Homeodomain-like containing protein 170 1e-42
Os06g0140700 Similar to Homeodomain leucine zipper protein ... 149 3e-36
AY346328 147 8e-36
Os02g0565600 Similar to Homeodomain leucine zipper protein ... 147 1e-35
Os06g0140400 Similar to HAHB-6 (Fragment) 142 4e-34
Os09g0447000 Homeobox domain containing protein 140 9e-34
Os06g0698200 135 4e-32
Os01g0643600 Homeobox domain containing protein 134 8e-32
Os02g0149900 107 9e-24
Os02g0729700 Similar to HAHB-7 (Fragment) 79 4e-15
Os10g0404900 Similar to HAHB-5 (Fragment) 77 2e-14
Os08g0416000 Homeodomain leucine zipper protein 76 3e-14
Os08g0481400 Similar to HAHB-7 (Fragment) 75 6e-14
Os09g0470500 Homeodomain leucine zipper protein 75 8e-14
Os03g0188900 Similar to HAHB-7 (Fragment) 73 3e-13
Os10g0103700 Similar to HD-ZIP protein (Fragment) 69 6e-12
Os09g0528200 Similar to Homeodomain leucine zipper protein ... 67 2e-11
Os09g0379600 Homeodomain-like containing protein 66 3e-11
>Os10g0561800 homeodomain leucine zipper protein hox1 [Oryza sativa (japonica
cultivar-group)]
Length = 311
Score = 351 bits (900), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 190/311 (61%), Positives = 190/311 (61%)
Query: 1 MEMMVHGRRDEQYXXXXXXXXXXXXXXXXXXXXDDEXXXXXXXXXXXXXXXLCGWNGGGL 60
MEMMVHGRRDEQY DDE LCGWNGGGL
Sbjct: 1 MEMMVHGRRDEQYGGLRLGLGLGLSLGVAGGAADDEQPPPRRGAAPPPQQQLCGWNGGGL 60
Query: 61 FXXXXXDHRGRSAMMACHDVIEMPFLRGIDVNRXXXXXXXXXXXRGPSCSEEDEEPGAXX 120
F DHRGRSAMMACHDVIEMPFLRGIDVNR RGPSCSEEDEEPGA
Sbjct: 61 FSSSSSDHRGRSAMMACHDVIEMPFLRGIDVNRAPAAETTTTTARGPSCSEEDEEPGASS 120
Query: 121 XXXXXXXXXGKRXXXXXXXXXXXXXXXXXXXXXXXRKKLRLSKDQAAVLEDTFKEHNTLN 180
GKR RKKLRLSKDQAAVLEDTFKEHNTLN
Sbjct: 121 PNSTLSSLSGKRGAPSAATAAAAAASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLN 180
Query: 181 PKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQ 240
PKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQ
Sbjct: 181 PKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQ 240
Query: 241 EXXXXXXXXXXXXXXXXXXXRVPPPTTLTMCPSCERVASAATTTRNNSGXXXXXXXXXXX 300
E RVPPPTTLTMCPSCERVASAATTTRNNSG
Sbjct: 241 ELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERVASAATTTRNNSGAAPARPVPTRP 300
Query: 301 XXXXXXQRSSA 311
QRSSA
Sbjct: 301 WPPAAAQRSSA 311
>Os04g0548700 Homeodomain-like containing protein
Length = 247
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 96/122 (78%), Gaps = 6/122 (4%)
Query: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
RKKLRLSKDQ+AVLED+F+EH TLNP+QKA LA+QL L+PRQVEVWFQNRRARTKLKQTE
Sbjct: 81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTE 140
Query: 216 VDCELLKRCCETLTDENRRLHRELQEXXXXXXXXXXXXXXXXXXXRVPPPTTLTMCPSCE 275
VDCE LKRCCETLT+ENRRL +E+QE + PPTTLTMCPSCE
Sbjct: 141 VDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMN------MSPPTTLTMCPSCE 194
Query: 276 RV 277
RV
Sbjct: 195 RV 196
>Os06g0140700 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 308
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/132 (61%), Positives = 90/132 (68%), Gaps = 1/132 (0%)
Query: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
RKKLRLSKDQAAVLE+ FK H+TLNPKQK ALA +L L+PRQVEVWFQNRRARTKLKQTE
Sbjct: 114 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTE 173
Query: 216 VDCELLKRCCETLTDENRRLHRELQEXXXXXXXXXXXXXXXXXXXRVPPPTTLTMCPSCE 275
VDCE LKR CE L DEN+RL +EL + TLTMCPSC
Sbjct: 174 VDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPS-SSAAATLTMCPSCR 232
Query: 276 RVASAATTTRNN 287
RVA+A + N
Sbjct: 233 RVATAGAPHQPN 244
>AY346328
Length = 292
Score = 147 bits (372), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 92/132 (69%), Gaps = 5/132 (3%)
Query: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
RKKLRLSK+Q++ LED+FKEH+TL PKQK+ LA +LNL+PRQVEVWFQNRRARTKLKQTE
Sbjct: 95 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTE 154
Query: 216 VDCELLKRCCETLTDENRRLHRELQEXXXXXXXXXXXXXXXXXXXRVPPP--TTLTMCPS 273
VDCE LKRCCE LT ENRRL RE+ E +P T +CPS
Sbjct: 155 VDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPS 214
Query: 274 CER---VASAAT 282
CE VA+AA+
Sbjct: 215 CEHSKVVAAAAS 226
>Os02g0565600 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 349
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 92/132 (69%), Gaps = 5/132 (3%)
Query: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
RKKLRLSK+Q++ LED+FKEH+TL PKQK+ LA +LNL+PRQVEVWFQNRRARTKLKQTE
Sbjct: 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTE 211
Query: 216 VDCELLKRCCETLTDENRRLHRELQEXXXXXXXXXXXXXXXXXXXRVPPP--TTLTMCPS 273
VDCE LKRCCE LT ENRRL RE+ E +P T +CPS
Sbjct: 212 VDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPS 271
Query: 274 CER---VASAAT 282
CE VA+AA+
Sbjct: 272 CEHSKVVAAAAS 283
>Os06g0140400 Similar to HAHB-6 (Fragment)
Length = 256
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/129 (62%), Positives = 91/129 (70%), Gaps = 7/129 (5%)
Query: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
RKKLRLSKDQAAVLE+ FK H+TL PKQK ALA+ LNL+PRQVEVWFQNRRARTKLKQTE
Sbjct: 93 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTE 152
Query: 216 VDCELLKRCCETLTDENRRLHRELQEXXXXXXXXXXXXXXXXXXXRVPPPTTLTMCPSCE 275
VDCE LKR C+ L D+NRRLH+EL E TTLTMC SC+
Sbjct: 153 VDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPL-------TTLTMCLSCK 205
Query: 276 RVASAATTT 284
RVA+A +
Sbjct: 206 RVANAGVPS 214
>Os09g0447000 Homeobox domain containing protein
Length = 90
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 76/81 (93%)
Query: 161 LSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEL 220
LSK+Q+A LE++FKEH+TLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE
Sbjct: 1 LSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEY 60
Query: 221 LKRCCETLTDENRRLHRELQE 241
LKRCCETLT+ENRRL +EL E
Sbjct: 61 LKRCCETLTEENRRLQKELAE 81
>Os06g0698200
Length = 256
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 84/124 (67%), Gaps = 2/124 (1%)
Query: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
RKKL+L+K+Q+ +LED+F+ HN L+ QK LARQL LKPRQVEVWFQNRRARTKLKQTE
Sbjct: 114 RKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTE 173
Query: 216 VDCELLKRCCETLTDENRRLHRELQEXXXXXXXXXXXXXXXXXXX--RVPPPTTLTMCPS 273
VDCE LKRCCE+LT+EN++L EL E R + +CPS
Sbjct: 174 VDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPS 233
Query: 274 CERV 277
CE+V
Sbjct: 234 CEKV 237
>Os01g0643600 Homeobox domain containing protein
Length = 229
Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 90/125 (72%), Gaps = 4/125 (3%)
Query: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
KKLRLSK+Q+ +LE++F+ ++TL PKQK ALA +L L+PRQVEVWFQNRRARTKLKQTE+
Sbjct: 78 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEM 137
Query: 217 DCELLKRCCETLTDENRRLHRELQEXXXXXXXXXXXXXXXXXXXRVP-PPTTLTMCPSCE 275
+CE LKRC +LT+ENRRL RE++E R P P + LTMCP CE
Sbjct: 138 ECEYLKRCFGSLTEENRRLQREVEE---LRAMRVAPPTVLSPHTRQPLPASALTMCPRCE 194
Query: 276 RVASA 280
R+ +A
Sbjct: 195 RITAA 199
>Os02g0149900
Length = 248
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 66/86 (76%)
Query: 156 RKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
RKKLRL+ +QA +LED+F+ HN L+ +K LA +L L RQVEVWFQNRRARTKLKQTE
Sbjct: 116 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTE 175
Query: 216 VDCELLKRCCETLTDENRRLHRELQE 241
DC+LL+R C+ L +N RL R+L E
Sbjct: 176 ADCDLLRRWCDHLAADNARLRRDLAE 201
>Os02g0729700 Similar to HAHB-7 (Fragment)
Length = 343
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 7/90 (7%)
Query: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
KK RL+ +Q +LE +F+E N L P++K LAR+L L+PRQV VWFQNRRAR K KQ E
Sbjct: 77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLER 136
Query: 217 DCELLKRCC-------ETLTDENRRLHREL 239
D + LK + L +N RLH ++
Sbjct: 137 DFDRLKASFDALRADHDALLQDNHRLHSQV 166
>Os10g0404900 Similar to HAHB-5 (Fragment)
Length = 351
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 7/90 (7%)
Query: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
KK RLS +Q LE +F+ N L P++KA LAR L L+PRQV +WFQNRRAR K KQ E
Sbjct: 104 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEK 163
Query: 217 DCELLKRCC-------ETLTDENRRLHREL 239
D + L+R + L N +LH E+
Sbjct: 164 DFDALRRQLDAARAENDALLSLNSKLHAEI 193
>Os08g0416000 Homeodomain leucine zipper protein
Length = 349
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 52/79 (65%)
Query: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
KK RL+ +Q +LE +F+E N L P++K LAR+L + PRQV VWFQNRRAR K KQ E
Sbjct: 86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEH 145
Query: 217 DCELLKRCCETLTDENRRL 235
D + LK + L ++ L
Sbjct: 146 DFDRLKAAYDALAADHHAL 164
>Os08g0481400 Similar to HAHB-7 (Fragment)
Length = 269
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
KK RLS +Q LE +F+ N L P++KA LAR L L+PRQV VWFQNRRAR K KQ E
Sbjct: 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 102
Query: 217 DCELLKRCCETLTDENRRLHRE 238
D L++ + L ++ L R+
Sbjct: 103 DYAALRQSYDALRADHDALRRD 124
>Os09g0470500 Homeodomain leucine zipper protein
Length = 277
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
KK RLS +Q LE +F+ N L P++KA LAR L L+PRQV VWFQNRRAR K KQ E
Sbjct: 51 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLER 110
Query: 217 DCELLKRCCETLTDENRRLHRE 238
D L+ ++L ++ L R+
Sbjct: 111 DYAALRHSYDSLRLDHDALRRD 132
>Os03g0188900 Similar to HAHB-7 (Fragment)
Length = 311
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 14/97 (14%)
Query: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE- 215
KK RL+ +Q LE +F N L+P +KA +AR L L+PRQV VWFQNRRAR K KQ E
Sbjct: 72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLER 131
Query: 216 -------------VDCELLKRCCETLTDENRRLHREL 239
DC+ L+R + L E R L +L
Sbjct: 132 DFAALRARHDALRADCDALRRDKDALAAEIRELREKL 168
>Os10g0103700 Similar to HD-ZIP protein (Fragment)
Length = 74
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/36 (88%), Positives = 35/36 (97%)
Query: 206 RARTKLKQTEVDCELLKRCCETLTDENRRLHRELQE 241
+ RTKLKQTEVDCELLKRCCETLT+ENRRLHRELQ+
Sbjct: 8 KCRTKLKQTEVDCELLKRCCETLTEENRRLHRELQQ 43
>Os09g0528200 Similar to Homeodomain leucine zipper protein (Fragment)
Length = 212
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 157 KKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEV 216
+K R S++Q LE F L P+QK LAR+L L+PRQV +WFQN+RAR K KQ E
Sbjct: 52 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLER 111
Query: 217 DCELLKRCCETLTDENRRLHRE 238
+ L+ + L L +E
Sbjct: 112 EYSALRDDYDALLCSYESLKKE 133
>Os09g0379600 Homeodomain-like containing protein
Length = 286
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 157 KKLRLSKDQAAVLEDTFKEHN-TLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTE 215
+K RL+ +Q LE +F+E L P++K+ LAR+L + PRQV VWFQNRRAR K KQ E
Sbjct: 48 RKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLE 107
Query: 216 VDCELLKRCCETL 228
+D + L+ + L
Sbjct: 108 LDFDRLRAAHDEL 120
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,446,723
Number of extensions: 164291
Number of successful extensions: 480
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 20
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)