BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0660200 Os07g0660200|AK067331
(604 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0660200 Similar to Chromodomain-helicase-DNA-binding p... 1142 0.0
Os05g0150300 Similar to Possible global transcription activ... 178 1e-44
Os01g0367900 Similar to Possible global transcription activ... 178 1e-44
Os06g0183800 Similar to Chromatin remodeling factor CHD3 (G... 176 6e-44
Os05g0144300 DEAD/DEAH box helicase, N-terminal domain cont... 150 2e-36
Os02g0689800 DEAD/DEAH box helicase domain containing protein 142 6e-34
Os07g0497000 Similar to Mi-2 autoantigen-like protein (Heli... 133 4e-31
Os01g0881000 Zinc finger, FYVE/PHD-type domain containing p... 132 1e-30
Os03g0101700 Similar to SNF2P 123 4e-28
Os05g0247900 DEAD/DEAH box helicase, N-terminal domain cont... 109 7e-24
Os01g0102800 DEAD/DEAH box helicase, N-terminal domain cont... 107 3e-23
AK111184 100 2e-21
Os07g0642400 DEAD/DEAH box helicase, N-terminal domain cont... 91 3e-18
Os10g0457700 Zinc finger, FYVE/PHD-type domain containing p... 88 2e-17
AK110250 86 1e-16
Os02g0527100 DEAD/DEAH box helicase, N-terminal domain cont... 83 6e-16
Os02g0762800 DEAD/DEAH box helicase, N-terminal domain cont... 83 8e-16
Os04g0177300 DEAD/DEAH box helicase, N-terminal domain cont... 79 8e-15
Os04g0629300 DEAD/DEAH box helicase, N-terminal domain cont... 77 3e-14
Os01g0779400 SWAP/Surp domain containing protein 77 5e-14
Os08g0180300 DEAD/DEAH box helicase, N-terminal domain cont... 74 3e-13
Os05g0392400 SNF2-related domain containing protein 74 4e-13
Os07g0636200 DEAD/DEAH box helicase, N-terminal domain cont... 72 1e-12
Os07g0511500 SNF2-related domain containing protein 70 3e-12
>Os07g0660200 Similar to Chromodomain-helicase-DNA-binding protein, CHD-1-related
Length = 604
Score = 1142 bits (2955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/604 (92%), Positives = 561/604 (92%)
Query: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN 60
MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN
Sbjct: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN 60
Query: 61 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL 120
LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL
Sbjct: 61 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL 120
Query: 121 DHLVIQKLNAEGRLEKKESKKGGSMFDKNELSAILRFGAXXXXXXXXXXXXXXXXXXSMD 180
DHLVIQKLNAEGRLEKKESKKGGSMFDKNELSAILRFGA SMD
Sbjct: 121 DHLVIQKLNAEGRLEKKESKKGGSMFDKNELSAILRFGAEELFKEDKTDEETKKKLESMD 180
Query: 181 IDEILERAEKVETKXXXXXXXXXLLSAFKVANFSSGEDDATFWSRLIQPDASDMVEETLA 240
IDEILERAEKVETK LLSAFKVANFSSGEDDATFWSRLIQPDASDMVEETLA
Sbjct: 181 IDEILERAEKVETKGGEGEEGNELLSAFKVANFSSGEDDATFWSRLIQPDASDMVEETLA 240
Query: 241 PRAARNKKSYVEDHQLDKNSNRKRRGIDAQEKPRRRSSRTMDTAVSLPLIDGSAHQVREW 300
PRAARNKKSYVEDHQLDKNSNRKRRGIDAQEKPRRRSSRTMDTAVSLPLIDGSAHQVREW
Sbjct: 241 PRAARNKKSYVEDHQLDKNSNRKRRGIDAQEKPRRRSSRTMDTAVSLPLIDGSAHQVREW 300
Query: 301 SFGNLSKKDATRFVRAVKKFGNPSQIGLIVDDVGGAIAKSSVDQQLELFTLLIEGCQDAV 360
SFGNLSKKDATRFVRAVKKFGNPSQIGLIVDDVGGAIAKSSVDQQLELFTLLIEGCQDAV
Sbjct: 301 SFGNLSKKDATRFVRAVKKFGNPSQIGLIVDDVGGAIAKSSVDQQLELFTLLIEGCQDAV 360
Query: 361 KNNMDAKGTVLDFFGVAVKAHELIARVEELQFLARRIARYKDPVRQYRIQAPYKKPQWSA 420
KNNMDAKGTVLDFFGVAVKAHELIARVEELQFLARRIARYKDPVRQYRIQAPYKKPQWSA
Sbjct: 361 KNNMDAKGTVLDFFGVAVKAHELIARVEELQFLARRIARYKDPVRQYRIQAPYKKPQWSA 420
Query: 421 SCGWTETDDARLMVGIHWYGYGNWEKIRLDPKLSLTAKIAPATLGERETFLPRAPNLDNR 480
SCGWTETDDARLMVGIHWYGYGNWEKIRLDPKLSLTAKIAPATLGERETFLPRAPNLDNR
Sbjct: 421 SCGWTETDDARLMVGIHWYGYGNWEKIRLDPKLSLTAKIAPATLGERETFLPRAPNLDNR 480
Query: 481 ASALLQKEFANLRGKSSKAKGGPRQAIDNESNGGARSLRGRQKDTKIKEDNNSIKDDFKK 540
ASALLQKEFANLRGKSSKAKGGPRQAIDNESNGGARSLRGRQKDTKIKEDNNSIKDDFKK
Sbjct: 481 ASALLQKEFANLRGKSSKAKGGPRQAIDNESNGGARSLRGRQKDTKIKEDNNSIKDDFKK 540
Query: 541 RKVVXXXXXXXXXXXXXXXXTKYRQDKEEKWLEWCSEVLDDEQEILKRLDRLQNTSVNLP 600
RKVV TKYRQDKEEKWLEWCSEVLDDEQEILKRLDRLQNTSVNLP
Sbjct: 541 RKVVEPEAREEGEISESEAETKYRQDKEEKWLEWCSEVLDDEQEILKRLDRLQNTSVNLP 600
Query: 601 KEKV 604
KEKV
Sbjct: 601 KEKV 604
>Os05g0150300 Similar to Possible global transcription activator SNF2L1 (SWI/SNF
related matrix associated actin dependent regulator of
chromatin subfamily A member 1)
Length = 1158
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 118/159 (74%), Gaps = 10/159 (6%)
Query: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN 60
M R+LDIL +YL +G+Q+ R+DG+T + R ++E FN PGS+ F FLLSTRAGGLGIN
Sbjct: 611 MTRLLDILEDYLMYKGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGIN 670
Query: 61 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL 120
LATAD VI++DSDWNPQ DLQA RAHRIGQ++ V ++RF T ++EE ++ERA KK+ L
Sbjct: 671 LATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 730
Query: 121 DHLVIQKLNAEGRLEKKESKKGGSMFDKNELSAILRFGA 159
D LVIQ +GRL ++++ +K+EL ++RFGA
Sbjct: 731 DALVIQ----QGRLAEQKA------VNKDELLQMVRFGA 759
>Os01g0367900 Similar to Possible global transcription activator SNF2L1 (SWI/SNF
related matrix associated actin dependent regulator of
chromatin subfamily A member 1)
Length = 1107
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/159 (54%), Positives = 118/159 (74%), Gaps = 10/159 (6%)
Query: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN 60
M R+LDIL +YL RG+Q+ R+DG+T + R ++E FN PGS+ F FLLSTRAGGLGIN
Sbjct: 557 MTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGIN 616
Query: 61 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL 120
LATAD V+++DSDWNPQ DLQA RAHRIGQ++ V ++RF T ++EE ++ERA KK+ L
Sbjct: 617 LATADVVVLYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLAL 676
Query: 121 DHLVIQKLNAEGRLEKKESKKGGSMFDKNELSAILRFGA 159
D LVIQ +GRL ++++ +K++L ++RFGA
Sbjct: 677 DALVIQ----QGRLAEQKT------VNKDDLLQMVRFGA 705
>Os06g0183800 Similar to Chromatin remodeling factor CHD3 (GYMNOS/PICKLE)
Length = 1335
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 140/501 (27%), Positives = 218/501 (43%), Gaps = 80/501 (15%)
Query: 3 RMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLA 62
MLD+L +YLS R + ++R+DG R ++ FNA S FCFLLSTRAGGLGINLA
Sbjct: 610 HMLDLLEDYLSYRKWSYERIDGKIGGAERQIRIDRFNAKNSTRFCFLLSTRAGGLGINLA 669
Query: 63 TADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDH 122
TADTVII+DSDWNP DLQAM+RAHR+GQ V IYR V+ ++EE +++ KKKMVL+H
Sbjct: 670 TADTVIIYDSDWNPHADLQAMARAHRLGQTSKVMIYRLVSRGTIEERMMQLTKKKMVLEH 729
Query: 123 LVIQKLNAEGRLEKKESKKGGSMFDKNELSAILRFGAXXXXXXXXXXXXXXXXXXSMD-- 180
LV+ GRL K G+ + EL I+R G+ D
Sbjct: 730 LVV------GRLTK------GTNIVQEELDDIIRHGSKELFDDENDEAGKSCQIHYDDAA 777
Query: 181 IDEILERAEKVETKXXXXXXXXXLLSAFKVANFS-----------------------SGE 217
ID +L+R + + L FKVANF +
Sbjct: 778 IDRLLDRDQADGEEPVEDEEEDEFLKGFKVANFEYIDEAKALAAKEEEARKKAEAEAANS 837
Query: 218 DDATFWSRLIQP--DASDMVEETLAPRAARNKKSYVEDHQLD------------------ 257
D A FW +L++ D + E T + R++K + D
Sbjct: 838 DRANFWDKLLKDRYDVQKVEEHTTMGKGKRSRKQMAAADEDDITGLHDMSSEDDDYSYDD 897
Query: 258 ---KNSNRKRRGIDAQEKP-RRRSSRTMDTAVSLPLIDGSAHQVREWSFGNLSKKDATRF 313
N + G+ + P ++ R +D SLP ++G +R + F + + T+F
Sbjct: 898 DVSDNDTSLQSGLAGRRGPYSKKKQRNVD---SLPFMEGEGRALRVYGFNQIQR---TQF 951
Query: 314 VRAVKKFG--NPSQIGLIVDDVGGAIAKSSVDQQLELFTLLIEGCQDAVKNNMDAKGTVL 371
++ + ++G N G ++ + +L + LL +++ G
Sbjct: 952 LQTLMRYGFQNYDWKEFTPRLKGKSVEEIQRYAELVMIHLL---------EDINDSGYYA 1002
Query: 372 DFFGVAVKAHELIARVEELQFLARRIARYKDP--VRQYRIQAPYKKPQWSASCGWTETDD 429
D ++ E + R+ + + ++A + + + Y+ P W D
Sbjct: 1003 DGVPKEMRTDETLVRLANISLVEEKVAAMEQGKITKLFPSYLLYEFPSLVGGRVWKAEQD 1062
Query: 430 ARLMVGIHWYGYGNWEKIRLD 450
L+ + +GY W+ I D
Sbjct: 1063 LLLLKALIKHGYARWQYISDD 1083
>Os05g0144300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1128
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 93/126 (73%)
Query: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN 60
M ++LDIL YL + F++ RLDGST+ + R + + FN S+ F FLLSTRAGGLG+N
Sbjct: 772 MTKLLDILEVYLQMYQFKYMRLDGSTKTEERGRLLADFNKKDSEYFLFLLSTRAGGLGLN 831
Query: 61 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL 120
L TADTVIIFDSDWNPQ D QA RAHRIGQ+ V ++ V+ S+EE+IL+RAK+KM +
Sbjct: 832 LQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKNEVRVFVLVSVGSIEEEILDRAKQKMGI 891
Query: 121 DHLVIQ 126
D VIQ
Sbjct: 892 DAKVIQ 897
>Os02g0689800 DEAD/DEAH box helicase domain containing protein
Length = 1059
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Query: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN 60
M +MLDIL E+++L G+ + RLDGST+ + R M+ FN F F+LSTR+GG+GIN
Sbjct: 119 MTKMLDILEEFINLYGYTYLRLDGSTQPEERQTLMQRFNT-NPKFFLFILSTRSGGVGIN 177
Query: 61 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL 120
L ADTVI +DSDWNP D QA R HRIGQ V+IYR ++ ++EE+IL++A +K L
Sbjct: 178 LVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRAL 237
Query: 121 DHLVIQK 127
D LVIQ+
Sbjct: 238 DDLVIQR 244
>Os07g0497000 Similar to Mi-2 autoantigen-like protein (Helicase-like protein)
Length = 622
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
Query: 1 MVRMLDILAEYLS--LRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLG 58
M ++LDIL +YL+ F+R+DGS R A+ FN S F FLLSTR+ GLG
Sbjct: 315 MTKLLDILEDYLTWEFGPKTFERVDGSVSVAERQAAIARFNQDKSR-FVFLLSTRSCGLG 373
Query: 59 INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKM 118
INLATADTVII+DSD+NP D+QAM+RAHRIGQ + +YR V SVEE IL AKKK+
Sbjct: 374 INLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILHLAKKKL 433
Query: 119 VLDHLVIQKLNAEGRLE 135
+LD L + K ++ +E
Sbjct: 434 MLDQLFVNKSESQKEVE 450
>Os01g0881000 Zinc finger, FYVE/PHD-type domain containing protein
Length = 1150
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 15/159 (9%)
Query: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN 60
M RMLDIL ++L G+++ R+DG T R +++E + S+ F FL+STRAGG+G++
Sbjct: 869 MTRMLDILEDFLCSLGYKYARIDGQTSLSARQESIEEYKNIDSETFIFLMSTRAGGMGVD 928
Query: 61 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL 120
L AD VII+D D+NP DLQA SRAHRIGQ V +Y+ +T SVEE IL+++K+K+ +
Sbjct: 929 LPGADRVIIYDPDFNPFMDLQAQSRAHRIGQTRPVVVYQLITKCSVEEKILQKSKQKLAI 988
Query: 121 DHLVIQKLNAEGRLEKKESKKGGSMFDKNELSAILRFGA 159
+++++ SKK + +EL +IL GA
Sbjct: 989 ENMLMNS-----------SKKPSA----DELQSILLHGA 1012
>Os03g0101700 Similar to SNF2P
Length = 842
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 107/172 (62%), Gaps = 19/172 (11%)
Query: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGS-----DD-----FCFLL 50
M + LDIL ++L LR + ++RLDGS RA+ R A++ F++ + DD F F++
Sbjct: 343 MTQTLDILQDFLELRQYTYERLDGSVRAEERFAAIKSFSSQPTKGVVRDDNQSGAFVFMI 402
Query: 51 STRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDI 110
STRAGG+G+NL ADTVI ++ DWNPQ D QA+ RAHRIGQ V V+ +++EE I
Sbjct: 403 STRAGGVGLNLIGADTVIFYEQDWNPQADKQALQRAHRIGQLNNVLSINLVSQRTIEEVI 462
Query: 111 LERAKKKMVLDHLVIQKLNA---EGRLEKKESKK------GGSMFDKNELSA 153
+ RA++K+ L H VI + +A +G+ + E+ G +FD ++ +A
Sbjct: 463 MRRAERKLKLSHSVIGEEDATYGKGKYVENEASDMRSIIFGLHLFDTSDTTA 514
>Os05g0247900 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 856
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 6/136 (4%)
Query: 2 VRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINL 61
VRMLDIL ++L +G+ F R DG+T + R ++ FN S FL+STRAG LG+NL
Sbjct: 546 VRMLDILEKFLIRKGYCFSRFDGTTPMNARQLLIDEFNRCPSKQV-FLISTRAGNLGVNL 604
Query: 62 ATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLD 121
+A+ V+IFD WNP DLQA R+ R GQ+ V ++R + S+EE I R K L
Sbjct: 605 VSANRVVIFDPSWNPAQDLQAQDRSFRFGQRRHVTVFRLLGAGSLEELIYSRQIYKQQLS 664
Query: 122 HLVIQKLNAEGRLEKK 137
++ + G++EK+
Sbjct: 665 NIAVS-----GKIEKR 675
>Os01g0102800 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1187
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 3 RMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDD-FCFLLSTRAGGLGINL 61
+MLDI+ +L+ +Q++R+DG T A R ++ FN +D+ F F+L+T+ GGLG NL
Sbjct: 740 QMLDIMENFLTACEYQYRRMDGLTPAKQRMALIDEFN--NTDEIFIFILTTKVGGLGTNL 797
Query: 62 ATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLD 121
A+ +II+D DWNP D+QA RA RIGQ V +YR +T ++EE + R K L
Sbjct: 798 TGANRIIIYDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLT 857
Query: 122 HLVIQ 126
+ V++
Sbjct: 858 NKVLK 862
>AK111184
Length = 1028
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 5 LDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDD-FCFLLSTRAGGLGINLAT 63
LDI+ + + + + RLDG T D R + FN G D F FLLS ++GG+G+NL
Sbjct: 697 LDIVEAMMRKKRYSYLRLDGKTPQDERMDMVNQFNRDGVDSSFVFLLSAKSGGVGLNLIG 756
Query: 64 ADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDHL 123
A+ +++ DSDWNP DLQAM+R HR GQ++ IYR + +++E I +R K+ L
Sbjct: 757 ANRLVLIDSDWNPSTDLQAMARIHRDGQKKVCYIYRLLLSGTMDEKIYQRQISKLGLTDS 816
Query: 124 VIQ 126
+I+
Sbjct: 817 LIK 819
>Os07g0642400 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 821
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 3 RMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLL-STRAGGLGINL 61
+ML +L L GF RLDGS A R + + F G D LL S +A G G+NL
Sbjct: 674 KMLILLEGPLKAAGFNILRLDGSMTAKKRSEVIRQFGCVGPDSPTVLLASLKAAGAGVNL 733
Query: 62 ATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILE--RAKKKMV 119
A TV +FD WNP + QAM R HRIGQ + V + R + S+EE +LE KKK++
Sbjct: 734 TAASTVYLFDPWWNPGVEEQAMDRVHRIGQTKEVKVVRLIVKDSIEERMLELQERKKKLI 793
>Os10g0457700 Zinc finger, FYVE/PHD-type domain containing protein
Length = 1319
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 15 RGFQFQRLDGSTRADLRHQAMEHFNAPGSDDF-CFLLSTRAGGLGINLATADTVIIFDSD 73
+G + R+DGST + R +E FN P + C L+STRAG +GINL +A+ VI+ D
Sbjct: 1167 QGKDWYRIDGSTPSSERQNLVERFNDPENIRVKCTLISTRAGYIGINLHSANRVILLDGS 1226
Query: 74 WNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDHLVIQKLNAEGR 133
WNP +DLQA+ R R GQ + V YR + ++EE I +R K L V+ +
Sbjct: 1227 WNPTHDLQAIYRVWRYGQTKPVYAYRLMAHATMEEKIYKRQVTKEGLAARVVDRQQVSRT 1286
Query: 134 LEKKE 138
+ K+E
Sbjct: 1287 ISKEE 1291
>AK110250
Length = 1046
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 1 MVRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGIN 60
V LD++A L GFQ RL+G+ + R++ ++HF + FL+S +AGG+ +N
Sbjct: 902 FVNFLDLIAFRLQRAGFQICRLEGNMSPEARNRTIKHF-MENPNVTVFLVSLKAGGVALN 960
Query: 61 LATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVL 120
L A V + D WNP ++QAM R HR+G+ + + R V S+E I+E KK +
Sbjct: 961 LTEASRVYLMDPWWNPSVEVQAMDRIHRLGRHRPIIVKRMVIENSIESRIIELQNKKSAM 1020
Query: 121 DHLVIQKLN-AEGRL 134
I K + A GRL
Sbjct: 1021 IEAAIGKDDGAVGRL 1035
>Os02g0527100 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 810
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Query: 4 MLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLAT 63
LD+L LS F F RLDG+ R + ++ F+ S L+S +AGG+GINL
Sbjct: 672 FLDLLQIPLSRHNFSFARLDGTLNLQQREKVIKEFSEDKSI-LVLLMSLKAGGVGINLTA 730
Query: 64 ADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEE--DILERAKKKMVLD 121
A + D WNP + QA+ R HRIGQ ++V+I RF+ +VEE + ++ K++M+
Sbjct: 731 ASNAFVMDPWWNPAVEEQAIMRIHRIGQTKSVSIKRFIVKGTVEERMEAVQARKQRMISG 790
Query: 122 HLVIQKLNAEGRLEK 136
L Q++ + R+E+
Sbjct: 791 ALTDQEVRS-ARIEE 804
>Os02g0762800 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 879
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 5 LDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATA 64
LD+ A+ R + + RLDG+T + R + + FN P D+F FLLS++AGG G+NL
Sbjct: 579 LDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLVGG 638
Query: 65 DTVIIFDSDWNPQNDLQAMSR 85
+ +I+FD DWNP ND Q R
Sbjct: 639 NRLILFDPDWNPANDKQVYQR 659
>Os04g0177300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 664
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 4 MLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLAT 63
D+L + +G +F R DG R + ++ F+ D L+S +AGG+G+NL
Sbjct: 526 FFDLLEVPFNQKGIKFLRFDGKLSQKHREKVLKEFSE-SKDKLVLLMSLKAGGVGLNLTA 584
Query: 64 ADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDI--LERAKKKMV 119
A V + D WNP + QA+ R HRIGQ+ V + RF+ +VEE + ++ K++M+
Sbjct: 585 ASNVFLMDPWWNPAVEEQAIMRIHRIGQKRAVQVRRFIVKDTVEERMQKVQACKQRMI 642
>Os04g0629300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1051
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 17 FQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNP 76
+F+RLDG+ +LR A+ FN + L+S +AG LG+N+ A VI+ D WNP
Sbjct: 921 IKFRRLDGAMSLNLREAAVREFNT-DPEVRVMLMSLKAGNLGLNMVAACHVIMIDPWWNP 979
Query: 77 QNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDI--LERAKKKMV 119
+ QA+ RAHRIGQ V + R +VE+ I L+ K+KMV
Sbjct: 980 YAEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKRKMV 1024
>Os01g0779400 SWAP/Surp domain containing protein
Length = 1213
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 2 VRMLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINL 61
RMLD++ +L ++RLDG+ R +A++ FN + ++S +A LG+N+
Sbjct: 1068 TRMLDLVEVHLKSSHLSYRRLDGTMSVAARDRAVKDFNT-NPEVSVMIMSLKAASLGLNM 1126
Query: 62 ATADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKK 117
A V++ D WNP + QA+ RAHRIGQ V + R +VE+ IL +KK
Sbjct: 1127 VAACHVLLLDLWWNPTTEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKK 1182
>Os08g0180300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1030
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Query: 4 MLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLAT 63
MLD+L L+ Q++RLDG+ + R +A++ FN + ++S +AG LG+N+
Sbjct: 887 MLDLLELSLNSNLIQYRRLDGTMSLNSRDKAVKDFNT-DPEVRVMIMSLKAGNLGLNMVA 945
Query: 64 ADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDI--LERAKKKMV 119
A VI+ D WNP + QA+ RAHRIGQ V + R +VE+ I L+ K+ MV
Sbjct: 946 ACHVILLDLWWNPYAEDQAIDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEEKRAMV 1003
>Os05g0392400 SNF2-related domain containing protein
Length = 450
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 16 GFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWN 75
G + ++DG R ++E FN P SD L STRA GI+L A V++ D WN
Sbjct: 273 GKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGASRVVLLDVVWN 332
Query: 76 PQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDHL 123
P QA+SRA RIGQ++ V Y +T + E D +R +K DHL
Sbjct: 333 PAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEK---DHL 377
>Os07g0636200 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 747
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 4 MLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDF-CFLLSTRAGGLGINLA 62
ML+ + ++L + + R+DG T +R + F DD +LS +AGG+G+ L
Sbjct: 580 MLEAIHQHLLKKKVKCIRIDGQTPVPVRQTLVTDFQ--NKDDIKAAVLSIKAGGVGLTLT 637
Query: 63 TADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKM 118
A TVI + W P + +QA RAHRIGQ +VNIY + +V++ I + + K+
Sbjct: 638 AASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQGKL 693
>Os07g0511500 SNF2-related domain containing protein
Length = 635
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 4 MLDILAEYLSLRGFQFQRLDGSTRADLRHQAMEHF-NAPGSDDFCFLLSTRAGGLGINLA 62
LD++ L G + +L+G + +A++ F N P D FL+S +AGG+ +NL
Sbjct: 494 FLDLIEFSLQKSGIKCVQLNGKMNIVEKGKAIDTFTNDP--DCRIFLMSLKAGGVALNLT 551
Query: 63 TADTVIIFDSDWNPQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILE-RAKKKMVLD 121
A V + D WNP + QA R HRIGQ + + RFV +VEE IL+ + KK++V +
Sbjct: 552 VASHVFLMDPWWNPAVESQAQDRIHRIGQFKPIRSMRFVIKDTVEERILQLQEKKRLVFE 611
Query: 122 HLVIQKLNAEGRLEKKESK 140
V A +L + + K
Sbjct: 612 GTVGDSPEAMSKLTEADLK 630
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,633,061
Number of extensions: 737191
Number of successful extensions: 2235
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 2218
Number of HSP's successfully gapped: 24
Length of query: 604
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 497
Effective length of database: 11,448,903
Effective search space: 5690104791
Effective search space used: 5690104791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)