Os07g0660200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chromodomain-helicase-DNA-binding protein, CHD-1-related.
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Os07g0660200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chromodomain-helicase-DNA-binding protein, CHD-1-related.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.95 | 0.261 | 9.21 | 0.42 | 0.505 | -0.269 | -0.899 | 3.58 | 0.0706 | 5.08 | 25.95 | 1047 | -- | -- |
| 33.59 | 0.27 | 9.3 | -0.305 | 0.566 | 0.14 | -1.01 | -- | -0.107 | 5.37 | 24.2 | 6017 | -- | -- |
| 32.18 | 0.264 | 9.22 | 0.307 | 0.502 | -0.267 | -- | 4.06 | 0.0445 | 5.46 | 26.2 | 791 | -- | -- |
| 34.83 | 0.275 | 9.29 | -0.304 | 0.491 | 0.209 | -- | -- | -0.0623 | 5.55 | 29.7 | 6054 | -- | -- |
| 42.72 | 0.304 | 9.22 | 0.459 | -- | -0.623 | -- | 4.35 | 0.102 | -- | 24.65 | 551 | -- | -- |
| 34.24 | 0.274 | 9.3 | -0.293 | 0.53 | -- | -0.882 | -- | -0.0904 | 5.31 | -- | -- | -- | -- |
| 36.15 | 0.282 | 9.3 | -0.294 | 0.526 | -- | -- | -- | -0.0862 | 5.47 | -- | -- | -- | -- |
| 48.34 | 0.324 | 9.3 | -0.343 | -- | 0.208 | -- | -- | -0.0441 | -- | 29.9 | 5686 | -- | -- |
| 37.07 | 0.284 | 9.3 | -- | 0.518 | 0.194 | -- | -- | -0.0822 | 5.44 | 34.75 | 7428 | -- | -- |
| 50.52 | 0.332 | 9.31 | -0.276 | -- | -- | -- | -- | -0.0734 | -- | -- | -- | -- | -- |
| 38.42 | 0.29 | 9.29 | -- | 0.521 | -- | -- | -- | -0.0535 | 5.49 | -- | -- | -- | -- |
| 50.33 | 0.33 | 9.3 | -- | -- | 0.176 | -- | -- | -0.0562 | -- | 34 | 7056 | -- | -- |
| 52.53 | 0.338 | 9.3 | -- | -- | -- | -- | -- | -0.0427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.45 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 2 | 29.47 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 13 | 29.84 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 13 |
| 17 | 29.87 | temperature | 25.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 22 | 29.90 | temperature | 25.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 30 | 29.98 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 59 | 30.13 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 82 | 30.27 | temperature | 25.0 | 10 | > th | dose independent | rect. | 17 | 9 |
| 111 | 30.38 | temperature | 25.0 | 270 | > th | dose independent | sin | 13 | NA |
| 124 | 30.44 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 197 | 30.68 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 215 | 30.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 218 | 30.75 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 259 | 30.83 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 279 | 30.88 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 283 | 30.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 286 | 30.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 288 | 30.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 298 | 30.94 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 303 | 30.95 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 304 | 30.95 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 305 | 30.95 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 308 | 30.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 328 | 30.99 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 329 | 31.00 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 347 | 31.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 356 | 31.03 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 22 |
| 393 | 31.07 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 398 | 31.08 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 401 | 31.08 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 405 | 31.09 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 406 | 31.09 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 407 | 31.09 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 414 | 31.10 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 447 | 31.13 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 448 | 31.13 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 17 | 6 |
| 453 | 31.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 455 | 31.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 464 | 31.15 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 492 | 31.17 | wind | 5.0 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 493 | 31.17 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 501 | 31.18 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 507 | 31.18 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 516 | 31.19 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 526 | 31.19 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 545 | 31.20 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 546 | 31.20 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 574 | 31.21 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 575 | 31.21 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 590 | 31.22 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 607 | 31.23 | temperature | 20.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 623 | 31.23 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 624 | 31.23 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 636 | 31.24 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 660 | 31.25 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 665 | 31.25 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 670 | 31.25 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 675 | 31.25 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 20 | 13 |
| 678 | 31.26 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 685 | 31.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 701 | 31.26 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 712 | 31.27 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 728 | 31.27 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 730 | 31.27 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 735 | 31.28 | wind | 1.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 737 | 31.28 | wind | 1.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 753 | 31.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 778 | 31.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 786 | 31.30 | temperature | 20.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 824 | 31.31 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 827 | 31.31 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 838 | 31.31 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 839 | 31.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 840 | 31.31 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 845 | 31.31 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 850 | 31.31 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 862 | 31.32 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 881 | 31.32 | wind | 7.0 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 896 | 31.32 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 910 | 31.33 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 911 | 31.33 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 913 | 31.33 | wind | 5.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 916 | 31.33 | wind | 1.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 935 | 31.33 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 949 | 31.33 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 953 | 31.34 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 961 | 31.34 | wind | 7.0 | 14400 | < th | dose independent | rect. | 20 | 13 |