Os08g0180300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os08g0180300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.88 | 0.14 | 12.2 | 1.11 | 0.0927 | 0.393 | 0.0638 | -0.7 | 0.275 | 9.01 | 31.29 | 316 | -- | -- |
| 9.32 | 0.142 | 12.2 | 1 | 0.0802 | 0.418 | 0.0349 | -- | 0.262 | 9.44 | 29.79 | 331 | -- | -- |
| 8.89 | 0.139 | 12.2 | 1.11 | 0.0926 | 0.394 | -- | -0.696 | 0.275 | 8.94 | 31.41 | 316 | -- | -- |
| 9.31 | 0.142 | 12.3 | 0.991 | 0.0809 | 0.394 | -- | -- | 0.25 | 9.47 | 29.9 | 317 | -- | -- |
| 9.27 | 0.142 | 12.2 | 1.12 | -- | 0.453 | -- | -0.707 | 0.283 | -- | 32 | 384 | -- | -- |
| 11.16 | 0.157 | 12.3 | 0.898 | 0.178 | -- | -0.0721 | -- | 0.174 | 6.67 | -- | -- | -- | -- |
| 11.18 | 0.157 | 12.3 | 0.897 | 0.178 | -- | -- | -- | 0.174 | 6.76 | -- | -- | -- | -- |
| 9.68 | 0.145 | 12.3 | 1 | -- | 0.435 | -- | -- | 0.256 | -- | 30.75 | 396 | -- | -- |
| 32.3 | 0.266 | 12.3 | -- | 0.199 | -0.0614 | -- | -- | 0.0642 | 6.12 | 29.9 | 317 | -- | -- |
| 12.83 | 0.167 | 12.3 | 0.901 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 32.36 | 0.266 | 12.3 | -- | 0.189 | -- | -- | -- | 0.0745 | 6.47 | -- | -- | -- | -- |
| 20.9 | 0.213 | 12.3 | -- | -- | -0.587 | -- | -- | -0.0977 | -- | 35.78 | 47520 | -- | -- |
| 34.22 | 0.273 | 12.3 | -- | -- | -- | -- | -- | 0.078 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 3 | 8.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 5 | 8.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 6 | 8.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 7 | 8.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 8 | 8.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 21 | 8.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 22 | 8.92 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 28 | 8.94 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 30 | 8.94 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 39 | 8.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 40 | 8.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 48 | 8.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 55 | 8.99 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 60 | 9.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 61 | 9.00 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 68 | 9.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 75 | 9.02 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 79 | 9.02 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 87 | 9.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 104 | 9.04 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 107 | 9.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 108 | 9.04 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 114 | 9.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 117 | 9.04 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 118 | 9.04 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 131 | 9.05 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 141 | 9.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 147 | 9.06 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 152 | 9.06 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 155 | 9.06 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 164 | 9.07 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 167 | 9.07 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 194 | 9.08 | humidity | 80 | 14400 | > th | dose dependent | sin | 10 | NA |
| 234 | 9.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 237 | 9.10 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 281 | 9.12 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 282 | 9.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 333 | 9.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 339 | 9.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 344 | 9.14 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 347 | 9.14 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 354 | 9.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 364 | 9.14 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 365 | 9.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 379 | 9.15 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 394 | 9.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 418 | 9.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 446 | 9.16 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 476 | 9.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 526 | 9.17 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 533 | 9.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 546 | 9.18 | radiation | 1 | 14400 | > th | dose independent | sin | 11 | NA |
| 569 | 9.18 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 648 | 9.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 649 | 9.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 698 | 9.20 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 717 | 9.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 20 |
| 788 | 9.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 813 | 9.22 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 815 | 9.22 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 856 | 9.22 | wind | 9 | 43200 | > th | dose dependent | sin | 12 | NA |
| 861 | 9.22 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 6 |
| 862 | 9.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 876 | 9.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 902 | 9.23 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 907 | 9.23 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 908 | 9.23 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 949 | 9.23 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 959 | 9.23 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 4 |
| 968 | 9.23 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 8 |