Os05g0392400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SNF2-related domain containing protein.
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Os05g0392400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SNF2-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.73 | 0.563 | 6.94 | 0.707 | 2.46 | -1.56 | 2.17 | 1.09 | -0.0892 | 18.7 | 38.27 | 297 | -- | -- |
| 146.1 | 0.563 | 6.94 | 0.719 | 2.42 | -1.69 | 2.01 | -- | -0.0844 | 18.8 | 40 | 296 | -- | -- |
| 155.02 | 0.58 | 6.94 | 0.669 | 2.4 | -1.6 | -- | 0.689 | -0.0839 | 18.9 | 31.39 | 296 | -- | -- |
| 156.08 | 0.582 | 6.94 | 0.676 | 2.39 | -1.68 | -- | -- | -0.0882 | 18.7 | 40.08 | 311 | -- | -- |
| 214.94 | 0.683 | 6.94 | 1.47 | -- | -3.73 | -- | -4.82 | -0.053 | -- | 10.44 | 659 | -- | -- |
| 179.53 | 0.628 | 6.91 | 0.778 | 3.14 | -- | 1.81 | -- | 0.0337 | 17.5 | -- | -- | -- | -- |
| 187.5 | 0.641 | 6.91 | 0.772 | 3.15 | -- | -- | -- | 0.042 | 17.5 | -- | -- | -- | -- |
| 175.69 | 0.617 | 6.89 | 0.667 | -- | -3.76 | -- | -- | -0.154 | -- | 6.878 | 675 | -- | -- |
| 167.78 | 0.603 | 6.95 | -- | 2.24 | -1.77 | -- | -- | -0.168 | 18.8 | 36.16 | 346 | -- | -- |
| 704.8 | 1.24 | 6.86 | 0.667 | -- | -- | -- | -- | -0.035 | -- | -- | -- | -- | -- |
| 203.19 | 0.667 | 6.93 | -- | 3.14 | -- | -- | -- | -0.044 | 17.5 | -- | -- | -- | -- |
| 186.83 | 0.637 | 6.91 | -- | -- | -3.79 | -- | -- | -0.221 | -- | 5.99 | 685 | -- | -- |
| 716.55 | 1.25 | 6.88 | -- | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.73 | radiation | 3e+01 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 16 | 142.67 | radiation | 2e+01 | 270 | < th | dose independent | rect. | 15 | 22 |
| 27 | 143.37 | radiation | 3e+01 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 37 | 143.82 | radiation | 1e+00 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 38 | 143.83 | radiation | 2e+01 | 270 | < th | dose independent | rect. | 1 | 23 |
| 48 | 144.26 | radiation | 3e+01 | 270 | < th | dose dependent | no | NA | NA |
| 71 | 145.21 | radiation | 2e+01 | 270 | < th | dose independent | no | NA | NA |
| 75 | 145.34 | radiation | 1e+00 | 270 | > th | dose dependent | rect. | 5 | 14 |
| 85 | 145.36 | radiation | 1e+00 | 270 | > th | dose dependent | no | NA | NA |
| 164 | 145.58 | radiation | 2e+01 | 270 | < th | dose independent | rect. | 9 | 13 |
| 175 | 145.93 | radiation | 4e+01 | 270 | < th | dose dependent | rect. | 9 | 13 |
| 177 | 145.96 | radiation | 1e+00 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 221 | 146.37 | radiation | 1e+00 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 250 | 146.77 | radiation | 2e+01 | 270 | < th | dose dependent | sin | 22 | NA |
| 262 | 147.01 | radiation | 1e+00 | 270 | > th | dose dependent | sin | 23 | NA |
| 292 | 147.26 | radiation | 1e+00 | 720 | > th | dose dependent | sin | 11 | NA |
| 295 | 147.31 | radiation | 1e+01 | 270 | < th | dose independent | sin | 22 | NA |
| 304 | 147.40 | radiation | 3e+01 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 313 | 147.49 | radiation | 2e+01 | 270 | < th | dose independent | rect. | 7 | 23 |
| 357 | 147.89 | radiation | 1e+00 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 361 | 147.90 | radiation | 1e+00 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 380 | 148.00 | radiation | 2e+01 | 270 | > th | dose independent | rect. | 11 | 23 |
| 577 | 149.01 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 598 | 149.07 | radiation | 2e+01 | 270 | > th | dose independent | rect. | 7 | 10 |
| 615 | 149.11 | radiation | 2e+01 | 270 | > th | dose independent | no | NA | NA |
| 750 | 149.31 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 790 | 149.79 | radiation | 2e+01 | 270 | > th | dose independent | sin | 22 | NA |
| 792 | 149.79 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 827 | 149.88 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 841 | 150.02 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 863 | 150.15 | humidity | 7e+01 | 90 | > th | dose independent | rect. | 17 | 20 |
| 997 | 150.38 | humidity | 7e+01 | 90 | > th | dose independent | rect. | 17 | 22 |
| 1000 | 150.42 | radiation | 4e+01 | 720 | < th | dose dependent | sin | 11 | NA |