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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0689800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DEAD/DEAH box helicase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0183) R2 : 0.000894
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0247 (0.0386) R2dN8 : 0.00115 R2N8 : 0.000894
σ : 0.345
deviance : 54.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.37 0.291 10.3 1.46 0.346 -0.516 -0.173 5.45 0.102 9.56 30.1 1523 -- --
40.84 0.298 10.4 0.434 0.382 0.142 -0.156 -- 0.0512 9.2 31.25 2179 -- --
38.48 0.289 10.3 1.46 0.347 -0.52 -- 5.5 0.102 9.61 30.1 1527 -- --
40.4 0.296 10.4 0.413 0.366 0.187 -- -- 0.0587 9.55 30.7 4310 -- --
45.53 0.314 10.3 1.54 -- -0.583 -- 5.89 0.104 -- 30.1 1523 -- --
41.51 0.302 10.4 0.466 0.36 -- -0.211 -- 0.0248 9.37 -- -- -- --
41.67 0.302 10.4 0.458 0.361 -- -- -- 0.0247 9.41 -- -- -- --
48.28 0.324 10.4 0.41 -- 0.171 -- -- 0.0555 -- 30.65 4314 -- --
44.54 0.311 10.4 -- 0.375 0.284 -- -- 0.0239 9.5 30 4260 -- --
49.29 0.328 10.4 0.456 -- -- -- -- 0.0259 -- -- -- -- --
47.21 0.321 10.4 -- 0.36 -- -- -- -0.0263 9.32 -- -- -- --
52.51 0.338 10.4 -- -- 0.247 -- -- 0.0188 -- 29.97 4341 -- --
54.78 0.345 10.4 -- -- -- -- -- -0.0247 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.16 temperature 25 10 > th dose dependent rect. 18 14
6 36.31 temperature 25 4320 > th dose dependent rect. 6 1
7 36.35 temperature 25 4320 < th dose independent rect. 5 1
10 36.52 temperature 25 4320 > th dose independent rect. 5 2
11 36.57 wind 1 14400 > th dose independent rect. 1 2
18 36.69 radiation 10 30 < th dose independent rect. 6 13
21 36.73 temperature 25 10 > th dose dependent rect. 21 11
25 36.83 temperature 25 30 > th dose independent rect. 17 15
41 37.11 wind 1 14400 < th dose independent rect. 2 6
45 37.14 radiation 10 30 < th dose independent rect. 6 17
52 37.27 wind 1 14400 < th dose independent rect. 2 2
55 37.29 wind 1 14400 < th dose dependent rect. 2 6
59 37.36 radiation 10 10 < th dose independent rect. 6 9
68 37.43 wind 1 14400 > th dose independent rect. 2 6
69 37.46 wind 1 14400 < th dose independent rect. 1 4
70 37.46 radiation 1 90 > th dose independent rect. 17 14
84 37.61 temperature 25 10 > th dose dependent rect. 5 3
87 37.64 temperature 25 30 > th dose dependent rect. 1 7
97 37.69 wind 1 14400 < th dose dependent rect. 2 2
99 37.71 humidity 90 30 < th dose dependent rect. 5 2
106 37.74 humidity 70 14400 < th dose independent rect. 8 2
107 37.74 humidity 50 14400 < th dose dependent rect. 16 1
120 37.78 humidity 70 14400 > th dose independent rect. 8 2
122 37.79 humidity 60 14400 < th dose dependent rect. 12 1
133 37.81 humidity 70 14400 < th dose independent rect. 19 16
134 37.81 humidity 50 14400 > th dose independent rect. 15 19
136 37.82 humidity 50 14400 > th dose independent sin 11 NA
137 37.82 humidity 90 14400 < th dose independent rect. 2 4
144 37.83 humidity 50 14400 < th dose dependent rect. 16 17
164 37.86 humidity 90 10 < th dose dependent rect. 17 14
178 37.87 humidity 80 14400 < th dose dependent rect. 19 15
187 37.90 radiation 10 30 < th dose independent rect. 6 22
196 37.93 humidity 70 14400 > th dose independent rect. 19 15
198 37.94 humidity 50 14400 > th dose independent rect. 15 2
215 37.96 humidity 50 14400 < th dose independent rect. 16 20
222 37.97 humidity 60 14400 < th dose dependent rect. 18 1
225 37.98 humidity 70 14400 < th dose dependent rect. 10 1
226 37.99 temperature 25 90 > th dose independent rect. 5 3
236 38.00 humidity 50 14400 > th dose independent rect. 15 5
243 38.00 humidity 50 14400 > th dose independent rect. 15 9
255 38.01 humidity 90 14400 > th dose independent rect. 1 5
259 38.01 humidity 50 14400 > th dose independent rect. 15 13
270 38.01 humidity 90 14400 > th dose dependent rect. 3 3
272 38.02 humidity 60 14400 > th dose independent rect. 11 1
276 38.02 humidity 90 14400 > th dose dependent rect. 4 1
278 38.02 humidity 70 14400 < th dose dependent rect. 10 3
282 38.03 radiation 10 30 < th dose independent rect. 6 4
293 38.03 humidity 70 14400 < th dose dependent rect. 8 5
294 38.03 humidity 70 14400 < th dose dependent rect. 18 19
308 38.04 humidity 80 14400 < th dose dependent rect. 8 1
327 38.05 humidity 80 14400 < th dose dependent sin 9 NA
351 38.07 humidity 60 14400 < th dose independent rect. 18 20
361 38.09 humidity 50 14400 < th dose independent sin 11 NA
378 38.10 temperature 25 4320 > th dose independent rect. 1 1
379 38.10 humidity 60 14400 < th dose independent rect. 11 2
383 38.10 temperature 30 1440 > th dose independent rect. 8 7
397 38.10 humidity 60 14400 > th dose independent rect. 18 19
410 38.11 humidity 50 14400 < th dose independent rect. 16 1
427 38.12 humidity 80 14400 < th dose dependent rect. 19 2
441 38.14 humidity 60 14400 < th dose independent rect. 8 6
462 38.15 humidity 90 30 < th dose independent rect. 17 6
467 38.15 temperature 20 30 > th dose dependent rect. 17 3
532 38.18 temperature 30 1440 > th dose independent sin 5 NA
558 38.18 humidity 90 30 < th dose independent rect. 5 18
575 38.19 humidity 60 14400 < th dose dependent sin 11 NA
579 38.19 humidity 90 10 < th dose dependent rect. 2 5
585 38.20 humidity 90 14400 > th dose independent rect. 3 3
616 38.21 temperature 25 10 > th dose dependent sin 11 NA
625 38.22 humidity 70 14400 < th dose independent sin 9 NA
626 38.22 humidity 90 14400 > th dose independent rect. 1 3
665 38.22 humidity 60 14400 < th dose dependent rect. 12 21
683 38.24 atmosphere 995 1440 > th dose independent rect. 18 6
687 38.24 humidity 90 30 < th dose independent rect. 17 14
694 38.25 temperature 30 1440 < th dose independent sin 6 NA
705 38.25 atmosphere 1000 10 > th dose independent rect. 7 23
745 38.26 temperature 30 1440 < th dose independent rect. 24 15
749 38.26 radiation 10 10 < th dose independent rect. 17 22
755 38.26 humidity 60 14400 < th dose dependent rect. 12 8
803 38.28 temperature 30 1440 < th dose independent rect. 8 7
821 38.29 radiation 1 4320 > th dose independent rect. 18 1
822 38.29 wind 1 43200 > th dose independent rect. 6 2
845 38.29 temperature 30 1440 < th dose independent rect. 5 10
878 38.29 humidity 60 14400 < th dose dependent rect. 8 12
906 38.30 humidity 60 14400 < th dose dependent no NA NA
910 38.30 temperature 20 30 > th dose dependent rect. 17 6