Os07g0636200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os07g0636200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.11 | 0.2 | 11.4 | 0.154 | 0.0802 | -0.499 | -0.56 | -0.636 | 0.21 | 21.3 | -0.9254 | 247 | -- | -- |
| 18.53 | 0.2 | 11.4 | 0.168 | 0.0755 | -0.544 | -0.532 | -- | 0.219 | 18.9 | -16.44 | 256 | -- | -- |
| 18.98 | 0.203 | 11.4 | 0.174 | 0.104 | -0.51 | -- | -0.316 | 0.214 | 20.9 | -0.03962 | 276 | -- | -- |
| 19.15 | 0.204 | 11.4 | 0.175 | 0.0959 | -0.463 | -- | -- | 0.211 | 22.6 | -0.000218 | 256 | -- | -- |
| 19.23 | 0.204 | 11.4 | 0.173 | -- | -0.532 | -- | -0.278 | 0.211 | -- | -0.4939 | 206 | -- | -- |
| 21.77 | 0.219 | 11.4 | 0.157 | 0.363 | -- | 0.0365 | -- | 0.179 | 1.5 | -- | -- | -- | -- |
| 21.77 | 0.218 | 11.4 | 0.156 | 0.363 | -- | -- | -- | 0.179 | 1.47 | -- | -- | -- | -- |
| 19.37 | 0.205 | 11.4 | 0.169 | -- | -0.525 | -- | -- | 0.208 | -- | -0.318 | 177 | -- | -- |
| 19.94 | 0.208 | 11.4 | -- | 0.104 | -0.448 | -- | -- | 0.191 | 23 | -10 | 256 | -- | -- |
| 29.86 | 0.255 | 11.4 | 0.17 | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
| 22.41 | 0.221 | 11.4 | -- | 0.366 | -- | -- | -- | 0.161 | 1.49 | -- | -- | -- | -- |
| 20.12 | 0.209 | 11.4 | -- | -- | -0.525 | -- | -- | 0.189 | -- | -2.905 | 176 | -- | -- |
| 30.62 | 0.258 | 11.4 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.23 | temperature | 30 | 270 | < th | dose independent | sin | 5 | NA |
| 6 | 17.63 | temperature | 30 | 270 | > th | dose independent | sin | 5 | NA |
| 12 | 17.78 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 13 |
| 13 | 17.79 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 7 |
| 52 | 17.95 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 57 | 17.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 61 | 18.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 62 | 18.03 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 64 | 18.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 91 | 18.11 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 94 | 18.11 | radiation | 40 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 120 | 18.15 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 123 | 18.16 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 125 | 18.16 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 152 | 18.17 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 237 | 18.19 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 253 | 18.20 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 271 | 18.22 | radiation | 20 | 720 | < th | dose independent | rect. | 17 | 18 |
| 286 | 18.25 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 288 | 18.25 | temperature | 30 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 304 | 18.26 | radiation | 1 | 270 | > th | dose dependent | sin | 2 | NA |
| 309 | 18.27 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 337 | 18.27 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 356 | 18.28 | radiation | 40 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 359 | 18.29 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 378 | 18.30 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 431 | 18.31 | radiation | 40 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 475 | 18.34 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 515 | 18.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 519 | 18.37 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 521 | 18.37 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 524 | 18.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 628 | 18.38 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 636 | 18.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 11 |
| 645 | 18.38 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 649 | 18.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 688 | 18.40 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 690 | 18.40 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 698 | 18.40 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 722 | 18.42 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 2 |
| 731 | 18.43 | radiation | 20 | 720 | < th | dose independent | rect. | 23 | 12 |
| 737 | 18.43 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 747 | 18.45 | radiation | 20 | 270 | < th | dose independent | rect. | 20 | 23 |
| 783 | 18.47 | radiation | 40 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 793 | 18.48 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 851 | 18.50 | radiation | 20 | 270 | < th | dose independent | rect. | 16 | 23 |
| 878 | 18.51 | radiation | 40 | 270 | < th | dose independent | sin | 5 | NA |
| 891 | 18.52 | radiation | 10 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 892 | 18.52 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 917 | 18.54 | radiation | 10 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 921 | 18.54 | temperature | 30 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 941 | 18.55 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 23 |
| 944 | 18.55 | temperature | 30 | 10 | > th | dose dependent | no | NA | NA |