Os07g0642400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os07g0642400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.83 | 0.269 | 10.1 | 1.14 | 1.29 | 0.233 | -0.168 | -1.35 | -0.406 | 15.5 | 19.38 | 1369 | -- | -- |
| 34.57 | 0.274 | 10.1 | 1.03 | 1.31 | 0.549 | -0.216 | -- | -0.417 | 15.5 | 18.49 | 2995 | -- | -- |
| 32.91 | 0.267 | 10.1 | 1.14 | 1.28 | 0.231 | -- | -1.39 | -0.409 | 15.5 | 19.3 | 1356 | -- | -- |
| 34.73 | 0.274 | 10.1 | 1.1 | 1.29 | 0.629 | -- | -- | -0.408 | 15.5 | 18.4 | 3572 | -- | -- |
| 122.74 | 0.516 | 10 | 1.24 | -- | 0.393 | -- | -1.32 | -0.366 | -- | 20.5 | 1091 | -- | -- |
| 39.17 | 0.293 | 10.1 | 0.801 | 1.3 | -- | -0.302 | -- | -0.52 | 15.5 | -- | -- | -- | -- |
| 39.46 | 0.294 | 10.1 | 0.796 | 1.3 | -- | -- | -- | -0.522 | 15.5 | -- | -- | -- | -- |
| 120.18 | 0.513 | 10.2 | 0.596 | -- | -0.411 | -- | -- | -0.763 | -- | 24.19 | 2626 | -- | -- |
| 55.98 | 0.348 | 10.1 | -- | 1.27 | 0.201 | -- | -- | -0.607 | 15.4 | 17.1 | 1513 | -- | -- |
| 133.9 | 0.541 | 10.1 | 0.741 | -- | -- | -- | -- | -0.556 | -- | -- | -- | -- | -- |
| 56.15 | 0.351 | 10.1 | -- | 1.28 | -- | -- | -- | -0.611 | 15.5 | -- | -- | -- | -- |
| 129.19 | 0.531 | 10.2 | -- | -- | -0.476 | -- | -- | -0.859 | -- | 24.19 | 2626 | -- | -- |
| 148.38 | 0.569 | 10.1 | -- | -- | -- | -- | -- | -0.639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.72 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 11 | 29.18 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 12 | 29.20 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 13 | 29.20 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 21 | 29.35 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 30 | 29.57 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 31 | 29.57 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 44 | 29.69 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 47 | 29.70 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 49 | 29.70 | radiation | 10.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 58 | 29.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 59 | 29.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 70 | 29.83 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 72 | 29.83 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 18 |
| 74 | 29.83 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 75 | 29.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 77 | 29.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 78 | 29.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 81 | 29.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 82 | 29.84 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 87 | 29.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 173 | 30.10 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 177 | 30.13 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 187 | 30.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 221 | 30.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 224 | 30.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 226 | 30.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 228 | 30.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 229 | 30.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 230 | 30.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 234 | 30.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 7 |
| 236 | 30.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 258 | 30.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 17 |
| 262 | 30.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 263 | 30.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 270 | 30.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 284 | 30.48 | radiation | 10.0 | 270 | < th | dose independent | rect. | 18 | 7 |
| 287 | 30.48 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 291 | 30.49 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 296 | 30.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 297 | 30.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 307 | 30.50 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 308 | 30.50 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 312 | 30.50 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 18 | 7 |
| 352 | 30.57 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 354 | 30.58 | radiation | 1.0 | 270 | < th | dose independent | sin | 4 | NA |
| 376 | 30.61 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 384 | 30.62 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 389 | 30.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 420 | 30.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 437 | 30.70 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 440 | 30.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 441 | 30.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 459 | 30.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 484 | 30.82 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 488 | 30.84 | radiation | 1.0 | 270 | > th | dose independent | sin | 4 | NA |
| 492 | 30.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 506 | 30.87 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 522 | 30.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 523 | 30.89 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 524 | 30.89 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 16 |
| 525 | 30.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 16 |
| 527 | 30.89 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 529 | 30.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 550 | 30.93 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 558 | 30.95 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 8 |
| 563 | 30.95 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 564 | 30.95 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 8 |
| 578 | 30.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 16 |
| 585 | 30.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 601 | 30.99 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 607 | 31.00 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 612 | 31.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 7 |
| 719 | 31.10 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 18 |
| 724 | 31.10 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 738 | 31.12 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 789 | 31.17 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 803 | 31.19 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 9 |
| 817 | 31.20 | radiation | 40.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 840 | 31.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 857 | 31.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 859 | 31.23 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 18 |
| 874 | 31.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 879 | 31.26 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 6 |
| 886 | 31.26 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 895 | 31.28 | wind | 7.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 898 | 31.28 | temperature | 10.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 900 | 31.28 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 901 | 31.28 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 904 | 31.28 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 905 | 31.28 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 909 | 31.28 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 18 |