Os02g0527100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os02g0527100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.24 | 0.34 | 7.86 | 0.0898 | 0.987 | 1.11 | -0.959 | 1.08 | -0.168 | 16.7 | 17.18 | 257 | -- | -- |
| 52.81 | 0.338 | 7.89 | -0.075 | 0.977 | 1.08 | -0.636 | -- | -0.219 | 16.9 | 18.57 | 220 | -- | -- |
| 53.67 | 0.341 | 7.89 | -0.0901 | 0.997 | 1.1 | -- | 0.0328 | -0.225 | 17.1 | 18 | 172 | -- | -- |
| 53.67 | 0.341 | 7.89 | -0.0923 | 0.998 | 1.1 | -- | -- | -0.22 | 17.1 | 18 | 172 | -- | -- |
| 89.83 | 0.441 | 7.9 | -0.24 | -- | 1.85 | -- | 0.144 | -0.353 | -- | 18.96 | 243 | -- | -- |
| 70.3 | 0.393 | 7.85 | 0.167 | 1.37 | -- | -0.394 | -- | -0.0385 | 16.7 | -- | -- | -- | -- |
| 70.7 | 0.394 | 7.85 | 0.165 | 1.37 | -- | -- | -- | -0.0406 | 16.7 | -- | -- | -- | -- |
| 87.8 | 0.436 | 7.88 | -0.176 | -- | 1.7 | -- | -- | -0.261 | -- | 23.89 | 252 | -- | -- |
| 53.87 | 0.342 | 7.89 | -- | 1.01 | 1.06 | -- | -- | -0.209 | 17.1 | 18.02 | 174 | -- | -- |
| 169.46 | 0.608 | 7.84 | 0.113 | -- | -- | -- | -- | -0.0761 | -- | -- | -- | -- | -- |
| 71.42 | 0.395 | 7.86 | -- | 1.36 | -- | -- | -- | -0.0589 | 16.7 | -- | -- | -- | -- |
| 88.56 | 0.438 | 7.87 | -- | -- | 1.68 | -- | -- | -0.234 | -- | 24 | 253 | -- | -- |
| 169.79 | 0.608 | 7.84 | -- | -- | -- | -- | -- | -0.0887 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 41 | 50.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 60 | 51.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 109 | 52.40 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 133 | 52.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 137 | 52.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 147 | 53.04 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 373 | 55.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 375 | 55.25 | temperature | 10 | 10 | > th | dose dependent | sin | 19 | NA |
| 409 | 55.48 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 466 | 55.79 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 19 |
| 471 | 55.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 504 | 56.00 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 510 | 56.02 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 595 | 56.29 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 807 | 56.66 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 878 | 56.75 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 17 |
| 908 | 56.79 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 938 | 56.84 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 23 |
| 957 | 56.86 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |